Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM42_RS09490 Genome accession   NZ_LS483351
Coordinates   1814182..1814895 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus pyogenes strain NCTC8195     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1809182..1819895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM42_RS09480 (NCTC8195_01889) treC 1810251..1811879 (-) 1629 WP_002982249.1 alpha,alpha-phosphotrehalase -
  DQM42_RS09485 (NCTC8195_01890) treP 1811947..1813971 (-) 2025 WP_002982246.1 PTS system trehalose-specific EIIBC component -
  DQM42_RS09490 (NCTC8195_01891) treR 1814182..1814895 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  DQM42_RS09500 (NCTC8195_01892) - 1815174..1815493 (-) 320 Protein_1786 winged helix-turn-helix transcriptional regulator -
  DQM42_RS09505 (NCTC8195_01893) - 1815679..1816536 (+) 858 WP_002982226.1 VOC family protein -
  DQM42_RS09510 (NCTC8195_01894) yaaA 1816578..1817309 (+) 732 WP_002982222.1 peroxide stress protein YaaA -
  DQM42_RS09515 (NCTC8195_01895) nrdG 1817483..1818097 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM42_RS09520 (NCTC8195_01896) - 1818097..1818606 (-) 510 WP_002982216.1 GNAT family N-acetyltransferase -
  DQM42_RS09525 (NCTC8195_01897) - 1818615..1819550 (-) 936 WP_002982213.1 Gfo/Idh/MocA family protein -
  DQM42_RS10045 (NCTC8195_01898) - 1819579..1819725 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1138012 DQM42_RS09490 WP_002982243.1 1814182..1814895(+) (treR) [Streptococcus pyogenes strain NCTC8195]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1138012 DQM42_RS09490 WP_002982243.1 1814182..1814895(+) (treR) [Streptococcus pyogenes strain NCTC8195]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTTTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment