Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   DQM59_RS09655 Genome accession   NZ_LS483349
Coordinates   1883234..1883947 (+) Length   237 a.a.
NCBI ID   WP_002274633.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10449     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1878234..1888947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM59_RS09640 - 1879015..1879353 (-) 339 Protein_1796 lipase -
  DQM59_RS09645 (NCTC10449_01874) treC 1879439..1881067 (-) 1629 WP_002279989.1 alpha,alpha-phosphotrehalase -
  DQM59_RS09650 (NCTC10449_01875) treP 1881093..1883060 (-) 1968 WP_002279988.1 PTS system trehalose-specific EIIBC component -
  DQM59_RS09655 (NCTC10449_01876) treR 1883234..1883947 (+) 714 WP_002274633.1 trehalose operon repressor Regulator
  DQM59_RS10410 - 1884074..1884211 (+) 138 WP_002279987.1 hypothetical protein -
  DQM59_RS09660 (NCTC10449_01877) dexA 1884293..1886845 (-) 2553 WP_080036121.1 dextranase DexA -
  DQM59_RS09665 (NCTC10449_01878) dtd 1887333..1887779 (-) 447 WP_002269409.1 D-aminoacyl-tRNA deacylase -

Sequence


Protein


Download         Length: 237 a.a.        Molecular weight: 27793.15 Da        Isoelectric Point: 9.7425

>NTDB_id=1137915 DQM59_RS09655 WP_002274633.1 1883234..1883947(+) (treR) [Streptococcus mutans strain NCTC10449]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIVDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1137915 DQM59_RS09655 WP_002274633.1 1883234..1883947(+) (treR) [Streptococcus mutans strain NCTC10449]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTGTTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATTACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.578

100

0.996


Multiple sequence alignment