Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM48_RS09285 Genome accession   NZ_LS483348
Coordinates   1813714..1815075 (-) Length   453 a.a.
NCBI ID   WP_043895133.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808714..1820075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS09260 (NCTC8738_01960) - 1808760..1809926 (-) 1167 WP_020917529.1 CynX/NimT family MFS transporter -
  DQM48_RS09265 (NCTC8738_01961) gltX 1810032..1811489 (-) 1458 WP_061408708.1 glutamate--tRNA ligase -
  DQM48_RS09270 (NCTC8738_01962) - 1811612..1812109 (-) 498 WP_111699111.1 LURP-one-related/scramblase family protein -
  DQM48_RS09275 (NCTC8738_01963) - 1812148..1813074 (-) 927 WP_111699113.1 aldo/keto reductase -
  DQM48_RS09280 (NCTC8738_01964) - 1813101..1813598 (-) 498 WP_020917533.1 beta-class carbonic anhydrase -
  DQM48_RS09285 (NCTC8738_01965) radA 1813714..1815075 (-) 1362 WP_043895133.1 DNA repair protein RadA Machinery gene
  DQM48_RS09290 (NCTC8738_01966) - 1815111..1815557 (-) 447 WP_020917535.1 dUTP diphosphatase -
  DQM48_RS09295 (NCTC8738_01967) - 1815584..1816351 (-) 768 WP_058814289.1 epoxyqueuosine reductase QueH -
  DQM48_RS09300 (NCTC8738_01968) - 1816547..1817563 (+) 1017 WP_058832853.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DQM48_RS09305 (NCTC8738_01969) galU 1817630..1818544 (+) 915 WP_111699240.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DQM48_RS09310 (NCTC8738_01970) - 1818606..1819277 (-) 672 WP_020917539.1 rhomboid family intramembrane serine protease -
  DQM48_RS09315 (NCTC8738_01971) - 1819274..1819801 (-) 528 WP_020917540.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49536.85 Da        Isoelectric Point: 5.8259

>NTDB_id=1137843 DQM48_RS09285 WP_043895133.1 1813714..1815075(-) (radA) [Streptococcus lutetiensis strain NCTC8738]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESSEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYSPKNSLAGIDIPETIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1137843 DQM48_RS09285 WP_043895133.1 1813714..1815075(-) (radA) [Streptococcus lutetiensis strain NCTC8738]
ATCGCTAAGAAGAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAGTATTTAGGGCGTTGCCCAAACTG
TTCGTCATGGACGTCATTTGTTGAAGAAGTTGAGGTGCAAGAGGTTAAAAATGCGCGTGTCAGCTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTAAAAGATGTGAGCTCGATTAACTACTCACGCACGAAGACAGACATGGATGAATTTAACCGTGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACCCTGCTTTTGCA
AGTATCGATTCAGCTTGCTGACAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCATCTGAGCAGATTAAACTACGTA
GTGAACGTCTTGGCGATATTGACAATGAATTTTACCTTTATGCTGAGACTAATATGCAAGCCATTCGTGCGCAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAAACCATTATGAGCCCTGACATTTCTGGGGTTCAAGGGTCAGT
ATCACAAGTGCGTGAAGTGACAGCGGAGCTCATGCAACTAGCTAAGACTAATAATATTGCAACCTTTATCGTTGGTCATG
TGACTAAGGAGGGGCAGCTTGCTGGGCCGCGTATGCTTGAGCATATGGTGGATACAGTACTCTATTTTGAAGGGGAACGT
CACCATACTTTCCGTATTTTGCGTGCCGTGAAAAATCGTTTTGGCTCAACCAACGAAATTGGCATTTTTGAAATGCAATC
AGGCGGGCTTGTTGAAGTACTTAATCCTAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCGACTGGCTCAGCTATCG
TGGTTACTATGGAAGGAAGTCGTCCAATTTTAGCAGAAGTCCAAGCTTTGGTAACACCAACGGTTTTTGGAAATGCCAAA
CGCACAACGACAGGTCTTGATTTTAACCGAGTCAGCTTGATTATGGCGGTGCTTGAAAAACGTTGTGGGCTTTTGTTGCA
AAATCAAGATGCTTATCTCAAGTCAGCTGGTGGGGTGAAACTTGATGAACCAGCCATTGACTTGGCAGTTGCGGTAGCGA
TTGCGTCAAGCTATAAAGAAAAGCCAACCAATCCCCAAGAAGCTTTTATTGGTGAAATTGGTTTGACGGGTGAGATTCGT
CGTGTCACTCGTATTGAACAACGTATCAATGAAGCGGCAAAACTTGGCTTTACCAAAGTTTACTCGCCAAAGAATTCTTT
GGCTGGTATTGATATTCCAGAAACGATTGAAGTGGTTGGGGTAACGACCGTCGGTGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.274

99.779

0.881
  radA Streptococcus pneumoniae D39

88.274

99.779

0.881
  radA Streptococcus pneumoniae R6

88.274

99.779

0.881
  radA Streptococcus pneumoniae TIGR4

88.274

99.779

0.881
  radA Streptococcus mitis SK321

88.274

99.779

0.881
  radA Streptococcus mitis NCTC 12261

88.053

99.779

0.879
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment