Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM48_RS02970 Genome accession   NZ_LS483348
Coordinates   546790..548592 (+) Length   600 a.a.
NCBI ID   WP_111698327.1    Uniprot ID   A0AB38G432
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 541790..553592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS02945 (NCTC8738_00603) queA 542450..543478 (-) 1029 WP_020916428.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DQM48_RS02950 (NCTC8738_00604) - 543642..544148 (+) 507 WP_058833169.1 VIT1/CCC1 transporter family protein -
  DQM48_RS02955 (NCTC8738_00605) nagB 544281..544988 (+) 708 WP_020916430.1 glucosamine-6-phosphate deaminase -
  DQM48_RS02960 (NCTC8738_00606) - 545062..545778 (+) 717 WP_020916431.1 pseudouridine synthase -
  DQM48_RS02965 (NCTC8738_00608) - 545828..546790 (+) 963 Protein_511 competence protein CoiA -
  DQM48_RS02970 (NCTC8738_00609) pepF 546790..548592 (+) 1803 WP_111698327.1 oligoendopeptidase F Regulator
  DQM48_RS02975 (NCTC8738_00610) - 548661..549158 (+) 498 WP_020916434.1 GNAT family N-acetyltransferase -
  DQM48_RS02980 (NCTC8738_00611) - 549178..549789 (+) 612 WP_020916435.1 HAD-IA family hydrolase -
  DQM48_RS02985 (NCTC8738_00612) - 549837..550538 (+) 702 WP_020916436.1 O-methyltransferase -
  DQM48_RS02990 (NCTC8738_00613) - 550608..551669 (+) 1062 WP_020916437.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69032.12 Da        Isoelectric Point: 4.7510

>NTDB_id=1137820 DQM48_RS02970 WP_111698327.1 546790..548592(+) (pepF) [Streptococcus lutetiensis strain NCTC8738]
MSDNRSHIDEKYKWDLSTVFATDDAWEAELAKLDAGLEDAKKYKGHLTQSSKNLLTMTEHYLDLSRRLEKVYVYASMKND
QDTTVAKYQEYQAKATALYAKYSEVFAFYEPELMKLSAEDFAAFVAETPALSAYTHFFEQLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPEVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQFQHTYAKTLQTNVKVH
NYDARVHHFKSAREAALSANFIPEAVYDTLIDCVNAHLSLLHRYVALRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLAIFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHFLDGFKGTIFRQAQFAEFEDMIHKADQAGEVLTSEY
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQVDIDRYLDYLKAGNSDYPL
NVIEKAGVDMTSSDYLDAAFKIFEDRLNELEALVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1137820 DQM48_RS02970 WP_111698327.1 546790..548592(+) (pepF) [Streptococcus lutetiensis strain NCTC8738]
ATGTCAGATAATCGTAGTCATATCGATGAAAAATATAAATGGGATCTAAGCACTGTTTTTGCGACTGATGACGCTTGGGA
GGCTGAATTAGCTAAGTTAGATGCTGGTTTAGAAGATGCTAAAAAATACAAAGGTCACTTGACGCAATCAAGTAAGAATT
TGCTAACTATGACGGAGCATTATCTTGATTTGTCACGCAGATTGGAAAAAGTTTACGTCTATGCATCAATGAAAAATGAC
CAAGATACAACAGTGGCAAAATACCAAGAATACCAAGCTAAAGCCACAGCACTTTATGCTAAATACAGTGAAGTCTTTGC
TTTTTACGAACCAGAATTGATGAAATTATCAGCTGAAGATTTTGCGGCATTTGTTGCTGAGACGCCAGCACTATCAGCTT
ATACGCATTTCTTTGAACAACTTTTCAAACGCCAAGCACATGTCTTGTCACAAAAAGAAGAAGAACTCTTAGCTGGTGCA
CACGAAATTTTTGGTGCTGCTGGTGAAACTTTTGAAATTCTGGATAATGCTGATATTGTTTTCCCAGAGGTTTTAGATGA
TGAAGGCAATGAGGTACAATTAACACATGGTAATTTCATTAGTCTTTTGGAATCAAAAAATCGCGACGTCCGAAAAGCAG
CTTATGAAGCGATGTATGCCACTTATGAACAATTCCAACACACTTACGCTAAGACATTACAGACAAATGTTAAGGTTCAT
AACTATGATGCGCGTGTTCACCACTTCAAGTCAGCACGTGAGGCAGCACTTTCTGCTAACTTCATTCCAGAAGCAGTTTA
TGATACATTGATTGACTGTGTGAATGCACACTTGTCACTGCTTCATCGTTATGTGGCACTTCGTAAGAAAGTTCTTAAAT
TGGACGATTTGAAAATGTATGATATTCATACACCATTGTCTGAAATGGATATGAGTTTCACTTATGAAGAAGCTTTGAAA
AAAGCAGAAGAAGTTTTGGCTATCTTCGGTAAAGATTATTCTGAACGTGTTCACCGTGCTTTCACAGAACGTTGGATTGA
CGTTCATGTCAATAAAGGAAAACGCTCAGGAGCTTATTCTGGTGGGGCTTACGATACCAACGCCTTTATGCTTTTGAACT
GGCAAGATACGCTTGATAATCTGTTTACTTTGGTACATGAAACTGGGCACAGCCTTCATTCAACATTTACTCGTGAAAAT
CAACCGTATGTCTACGGTGATTACAGCATTTTCTTAGCTGAAATTGCTTCAACAACCAATGAAAATATTTTAACGGAAAC
GCTTTTGAAAGAAGTTGACGATGATAAAGCTCGCTTTGCGATTTTGAATCATTTCTTGGATGGTTTTAAAGGAACAATCT
TCCGTCAAGCACAATTTGCAGAGTTTGAAGATATGATTCATAAAGCAGACCAAGCTGGTGAAGTATTGACAAGCGAATAC
CTTAACAATCTTTATGCAGACCTAAATGAAAAATATTATGGTCTTAGCAAGGAAGACAATCCGGAAATTCAATACGAATG
GGCACGTATTCCGCATTTCTACTACAACTATTATGTTTATCAATACGCAACAGGTTTTGCAGCAGCAAGCTACCTAGCTG
ATAAAGTGGTTCACGGTACACAAGTTGATATCGACCGTTACCTTGATTACCTCAAGGCTGGTAATTCTGATTACCCACTT
AATGTGATTGAAAAAGCTGGAGTTGATATGACAAGTAGTGATTATCTGGATGCTGCCTTCAAGATTTTTGAAGACCGCCT
AAATGAACTAGAAGCCTTGGTTGAAAAAGGGGCACACCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72

100

0.72

Multiple sequence alignment