Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   DQM48_RS01660 Genome accession   NZ_LS483348
Coordinates   297330..298376 (+) Length   348 a.a.
NCBI ID   WP_111698225.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 292330..303376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS01645 (NCTC8738_00332) - 293593..295248 (+) 1656 WP_058813641.1 peptide ABC transporter substrate-binding protein -
  DQM48_RS01650 (NCTC8738_00333) - 295361..296275 (+) 915 WP_020916177.1 ABC transporter permease -
  DQM48_RS01655 (NCTC8738_00334) - 296287..297318 (+) 1032 WP_020916178.1 ABC transporter permease -
  DQM48_RS01660 (NCTC8738_00335) oppD 297330..298376 (+) 1047 WP_111698225.1 ABC transporter ATP-binding protein Regulator
  DQM48_RS01665 (NCTC8738_00336) amiF 298376..299308 (+) 933 WP_061409237.1 ABC transporter ATP-binding protein Regulator
  DQM48_RS01670 (NCTC8738_00337) - 299474..300427 (-) 954 Protein_270 IS30 family transposase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38636.17 Da        Isoelectric Point: 4.8670

>NTDB_id=1137808 DQM48_RS01660 WP_111698225.1 297330..298376(+) (oppD) [Streptococcus lutetiensis strain NCTC8738]
MSEETILQVKNLHVDFQTYAGEIKAIRDVNFDLKKGETLAIVGESGSGKSVTTKTLMGLSASNATITGDIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEAWDHALDLMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDVLIADEPTTALDVTIQAQILNLMKKIQKERGSSIIFITHDLGVVAGMADRVAVMYAGKVIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHYAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1137808 DQM48_RS01660 WP_111698225.1 297330..298376(+) (oppD) [Streptococcus lutetiensis strain NCTC8738]
ATGAGTGAAGAAACAATTTTACAAGTTAAAAACCTCCATGTAGATTTCCAAACCTACGCTGGAGAAATTAAAGCCATTCG
CGACGTCAACTTTGACTTGAAGAAAGGCGAAACACTTGCTATCGTAGGTGAATCTGGATCAGGTAAATCTGTAACAACTA
AAACATTAATGGGGTTATCTGCTTCAAATGCTACTATTACAGGTGACATTGACTTTAAAGGTAAAAAACTTACTGAATTA
AAAGAAGACGAATGGATTAAAGTTCGTGGAAATGAAATCGCAATGATTTTCCAAGATCCAATGACGAGTCTTGATCCAAC
AATGAAAATTGGTCAACAAATTGCCGAACCAATCATGATCCACGAAAAAGTTTCAAAACAAGAAGCTTGGGATCATGCAC
TTGATTTAATGAAGAACGTTGGTATTCCAAATGCAGAAGAACATATCAACGATTACCCACACCAATGGTCTGGTGGTATG
CGTCAACGTGCTGTTATTGCAATCGCGCTTGCTGCTAACCCGGATGTCTTGATTGCTGACGAACCAACAACTGCCTTGGA
TGTTACTATTCAAGCTCAAATTCTTAACTTGATGAAAAAAATTCAAAAAGAACGTGGTTCATCAATCATCTTTATCACCC
ACGACCTTGGTGTTGTTGCTGGTATGGCTGATCGTGTAGCAGTTATGTATGCTGGTAAAGTTATTGAATATGGAACAGTT
GACGAAGTCTTCTACAACCCACAACACCCATATACTTGGGGGTTGTTGAACTCAATGCCAACAACTGATACAGAAGCTGG
TAGCTTACAATCAATTCCAGGTACACCACCAGATCTTCTTAACCCGCCAAAAGGTGATGCTTTTGCACCACGTAACGAAT
TTGCTTTGGATATCGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGACACACACTATGCTGCAACTTGGTTGTTA
GACGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.115

99.713

0.799
  amiE Streptococcus salivarius strain HSISS4

57.31

98.276

0.563
  amiE Streptococcus thermophilus LMG 18311

57.91

96.264

0.557
  amiE Streptococcus thermophilus LMD-9

57.91

96.264

0.557

Multiple sequence alignment