Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM50_RS07670 Genome accession   NZ_LS483347
Coordinates   1467474..1468283 (-) Length   269 a.a.
NCBI ID   WP_023610429.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8324     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462474..1473283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM50_RS07660 (NCTC8324_01543) smc 1462799..1466338 (-) 3540 WP_111688516.1 chromosome segregation protein SMC -
  DQM50_RS07665 (NCTC8324_01544) rnc 1466339..1467031 (-) 693 WP_002990670.1 ribonuclease III -
  DQM50_RS07670 (NCTC8324_01545) vicX 1467474..1468283 (-) 810 WP_023610429.1 MBL fold metallo-hydrolase Regulator
  DQM50_RS07675 (NCTC8324_01546) vicK 1468287..1469639 (-) 1353 WP_002995609.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM50_RS07680 (NCTC8324_01547) vicR 1469632..1470342 (-) 711 WP_002985645.1 response regulator YycF Regulator
  DQM50_RS07685 (NCTC8324_01548) - 1470504..1471538 (-) 1035 WP_162472284.1 DUF3114 domain-containing protein -
  DQM50_RS07690 (NCTC8324_01549) - 1471594..1472841 (-) 1248 WP_011017492.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30055.14 Da        Isoelectric Point: 5.7156

>NTDB_id=1137777 DQM50_RS07670 WP_023610429.1 1467474..1468283(-) (vicX) [Streptococcus pyogenes strain NCTC8324]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGHNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1137777 DQM50_RS07670 WP_023610429.1 1467474..1468283(-) (vicX) [Streptococcus pyogenes strain NCTC8324]
ATGAATGAGAGTGGTTTTAAATACAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
GTCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGC
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.208

100

0.762

Multiple sequence alignment