Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQM73_RS12555 Genome accession   NZ_LS483346
Coordinates   213281..214069 (+) Length   262 a.a.
NCBI ID   WP_407697566.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11085     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 208281..219069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS01155 (NCTC11085_00225) galU 208487..209392 (-) 906 WP_002911531.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DQM73_RS01160 (NCTC11085_00226) - 209409..210431 (-) 1023 WP_002926241.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DQM73_RS01165 (NCTC11085_00227) - 210592..212298 (+) 1707 WP_032908249.1 ABC transporter ATP-binding protein -
  DQM73_RS12545 - 212300..212438 (+) 139 Protein_203 ABC transporter ATP-binding protein -
  DQM73_RS12550 - 212417..213145 (+) 729 Protein_204 ABC transporter ATP-binding protein -
  DQM73_RS12555 rcrQ 213281..214069 (+) 789 WP_407697566.1 ABC transporter ATP-binding protein Regulator
  DQM73_RS01175 (NCTC11085_00229) amiA 214185..216158 (-) 1974 WP_002926234.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS01180 (NCTC11085_00230) - 216386..217075 (+) 690 WP_002934505.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQM73_RS01190 (NCTC11085_00231) - 217342..217791 (+) 450 WP_002926230.1 8-oxo-dGTP diphosphatase -
  DQM73_RS01195 (NCTC11085_00232) - 217875..218318 (+) 444 WP_002926229.1 dUTP diphosphatase -
  DQM73_RS01200 (NCTC11085_00233) - 218320..218835 (+) 516 WP_002926228.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29176.85 Da        Isoelectric Point: 4.4047

>NTDB_id=1137735 DQM73_RS12555 WP_407697566.1 213281..214069(+) (rcrQ) [Streptococcus sanguinis strain NCTC11085]
MFDAPEEVRPENAPAFTELTDSVEIKHVDFSYVEGKPILKDVSILAPKGKMTAVVGPTGSGKTTIMNLLNRFYDVDSGSI
EFDGRDIRDYELDSLRSRVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVETAARATHIHDYIESLPDKYDTIVDDDQNIF
STGQKQLISIARTLLTDPQVLILDEATSNVDTVTESKIQQAMEAVVAGRTSFVIAHRLKTILNADQIIVLKDGEVIEQGD
HHQLLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1137735 DQM73_RS12555 WP_407697566.1 213281..214069(+) (rcrQ) [Streptococcus sanguinis strain NCTC11085]
ATGTTTGATGCGCCGGAGGAAGTCAGGCCAGAGAATGCACCTGCTTTCACAGAGCTTACAGACTCCGTGGAGATCAAGCA
TGTGGACTTCTCTTATGTAGAAGGCAAGCCTATTCTCAAAGACGTATCTATTTTAGCCCCTAAGGGCAAGATGACGGCTG
TTGTTGGCCCAACTGGATCAGGTAAGACGACCATTATGAACCTGCTTAATCGCTTTTACGATGTGGATAGTGGCAGCATT
GAGTTTGACGGTCGCGACATTCGGGACTATGAGCTGGATAGCTTACGGAGCCGTGTGGGCATTGTCTTGCAGGATTCGGT
GCTCTTTAGCGGTACGATTCGGGACAATATTCGCTTCGGTGTACCAGATGCCAGTCAGGAGATGGTCGAAACGGCTGCGC
GTGCGACTCATATTCATGATTATATTGAAAGTCTGCCAGACAAATACGATACCATCGTGGATGATGACCAGAATATTTTC
TCAACTGGGCAGAAACAGCTTATTTCCATTGCTAGAACCCTGCTGACGGATCCGCAAGTCTTAATTTTGGATGAAGCGAC
TTCCAATGTCGATACGGTGACGGAGAGCAAGATTCAGCAAGCCATGGAAGCCGTTGTAGCTGGCCGAACTAGCTTTGTCA
TTGCTCACCGCCTCAAGACAATTCTCAATGCCGACCAGATTATCGTCCTCAAAGACGGAGAGGTTATCGAACAGGGCGAT
CATCATCAGCTCCTCAAACTGGGTGGCTTCTATTCAGAACTTTATCACAACCAGTTTGTCTTTGAGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(39-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

48.649

98.855

0.481

Multiple sequence alignment