Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   DQM73_RS08965 Genome accession   NZ_LS483346
Coordinates   1807854..1808567 (+) Length   237 a.a.
NCBI ID   WP_032908093.1    Uniprot ID   A0A2X3XIC9
Organism   Streptococcus sanguinis strain NCTC11085     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1802854..1813567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS12350 - 1803483..1803623 (+) 141 WP_002923591.1 hypothetical protein -
  DQM73_RS08955 (NCTC11085_01756) treC 1803920..1805548 (-) 1629 WP_002923588.1 alpha,alpha-phosphotrehalase -
  DQM73_RS08960 (NCTC11085_01757) treP 1805621..1807666 (-) 2046 WP_002923587.1 PTS system trehalose-specific EIIBC component -
  DQM73_RS08965 (NCTC11085_01758) treR 1807854..1808567 (+) 714 WP_032908093.1 trehalose operon repressor Regulator
  DQM73_RS08970 (NCTC11085_01759) - 1808934..1810274 (-) 1341 WP_002923583.1 hemolysin family protein -
  DQM73_RS08975 (NCTC11085_01760) - 1810426..1811550 (-) 1125 WP_002923582.1 AI-2E family transporter -
  DQM73_RS08980 (NCTC11085_01761) - 1811625..1812419 (+) 795 WP_002923581.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 237 a.a.        Molecular weight: 27757.72 Da        Isoelectric Point: 8.2447

>NTDB_id=1137711 DQM73_RS08965 WP_032908093.1 1807854..1808567(+) (treR) [Streptococcus sanguinis strain NCTC11085]
MKKYKQLFKQIEKDILEERYAVGDFLPSEHQLTEDYQVSRDTVRKALALLQEEGLIEKVRGQGSKIIKQEQFDFPVSKLT
SYQEVVKQNNMQSKTNVVSLEKITVDQKLSDITGFPPYRLVWRIVRQRVVDQVASVLDIDYLDKGIVPDLTREIGEQSIY
AYLENDLKLNIAFAKKEFTIDHANDRDKILMDLGKDQQVVSVKSQVYLADGRQFQYTESRHKLDKFRFVDFAKRQKE

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1137711 DQM73_RS08965 WP_032908093.1 1807854..1808567(+) (treR) [Streptococcus sanguinis strain NCTC11085]
ATGAAGAAATACAAACAATTATTCAAACAGATTGAGAAAGATATTTTAGAGGAACGTTATGCAGTCGGAGACTTCTTGCC
CAGTGAACATCAGCTGACAGAAGACTACCAGGTTAGCCGCGACACGGTGCGCAAGGCTCTGGCCCTGCTGCAGGAAGAAG
GATTGATTGAAAAAGTCCGCGGACAGGGCTCCAAAATCATCAAGCAGGAACAGTTCGACTTTCCAGTGTCTAAGCTGACC
AGCTATCAAGAAGTAGTCAAGCAGAATAATATGCAGTCCAAAACCAATGTTGTCAGCTTGGAAAAGATTACCGTGGACCA
GAAATTGTCCGACATCACTGGCTTCCCTCCTTACCGACTGGTTTGGCGAATCGTCCGTCAGCGCGTTGTGGACCAAGTCG
CCTCTGTATTAGATATTGACTATTTAGACAAGGGCATCGTCCCTGACTTGACAAGGGAAATCGGTGAGCAATCCATTTAC
GCCTATTTGGAAAATGACTTAAAGCTCAATATCGCCTTTGCCAAAAAGGAATTTACCATCGATCACGCCAATGACCGAGA
CAAGATCCTCATGGATCTAGGCAAGGACCAGCAGGTCGTCTCTGTCAAGTCTCAGGTCTATCTGGCAGACGGCCGCCAGT
TTCAATATACCGAGAGCCGCCACAAGCTTGACAAATTTCGCTTTGTGGATTTTGCTAAGCGTCAGAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2X3XIC9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.916

100

0.599


Multiple sequence alignment