Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   DQM73_RS03190 Genome accession   NZ_LS483346
Coordinates   615882..616925 (+) Length   347 a.a.
NCBI ID   WP_002925587.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11085     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 610882..621925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS03155 (NCTC11085_00614) - 611427..611717 (-) 291 WP_002925593.1 DUF5960 family protein -
  DQM73_RS03160 (NCTC11085_00615) - 611695..612069 (-) 375 WP_002925592.1 hypothetical protein -
  DQM73_RS03165 (NCTC11085_00616) - 612066..613480 (-) 1415 Protein_585 Y-family DNA polymerase -
  DQM73_RS03170 (NCTC11085_00617) - 613484..614161 (-) 678 WP_002925590.1 XRE family transcriptional regulator -
  DQM73_RS03175 (NCTC11085_00618) - 614304..614792 (+) 489 WP_002925589.1 YcxB family protein -
  DQM73_RS03180 (NCTC11085_00619) rsmD 614863..615411 (+) 549 WP_002925588.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DQM73_RS03185 (NCTC11085_00620) coaD 615401..615895 (+) 495 WP_002902590.1 pantetheine-phosphate adenylyltransferase -
  DQM73_RS03190 (NCTC11085_00621) sepM 615882..616925 (+) 1044 WP_002925587.1 SepM family pheromone-processing serine protease Regulator
  DQM73_RS03195 (NCTC11085_00622) - 617107..617688 (+) 582 WP_002925585.1 YutD-like domain-containing protein -
  DQM73_RS03200 (NCTC11085_00623) rlmN 617685..618758 (+) 1074 WP_002925584.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  DQM73_RS03205 (NCTC11085_00624) - 618745..619284 (+) 540 WP_002925583.1 VanZ family protein -
  DQM73_RS03210 trpB 619651..620832 (+) 1182 WP_002925582.1 tryptophan synthase subunit beta -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 37946.14 Da        Isoelectric Point: 5.0267

>NTDB_id=1137691 DQM73_RS03190 WP_002925587.1 615882..616925(+) (sepM) [Streptococcus sanguinis strain NCTC11085]
MKRIKKFILPTVIGVTIAFFIAALYVRLPYYIEVPGGAEDVRQVLLVDNKADKEAGSYNFVTVGVEQATFAHLVYAWLTP
FTDIYSAKDMTGGSTDEEFNRINQFYMETSQNMAKYQGLTTAGKEIKMDYLGVYVLQVADNSTFKGVLNIADTVTGVNDK
TFESSEELVKYVNSQKLGDKIKVTFQEDGQEKSATGKVIKLENGKNGIGISLIDRTEVSSNIPITFSTEGIGGPSAGLMF
SLAIYTQLADPTLRDGRDIAGTGSISREGEVGEIGGIDKKVVSAAQSGADIFFAPNNELTEEEKKLSPNGKNNYQTALET
AKKIKTDMKIVPVKTLQDAIDYLKKNK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1137691 DQM73_RS03190 WP_002925587.1 615882..616925(+) (sepM) [Streptococcus sanguinis strain NCTC11085]
ATGAAAAGAATTAAGAAGTTTATATTGCCGACGGTCATTGGCGTCACTATTGCCTTTTTTATAGCAGCTCTTTACGTTCG
TCTGCCTTATTATATAGAAGTTCCTGGTGGTGCCGAGGATGTTCGTCAGGTCTTGCTGGTTGATAATAAGGCCGACAAGG
AAGCGGGTTCCTACAACTTTGTGACGGTCGGAGTAGAGCAGGCAACCTTTGCTCATCTGGTCTATGCTTGGCTGACCCCT
TTTACAGATATTTATTCTGCCAAGGATATGACGGGTGGCTCCACGGATGAGGAGTTCAATCGGATCAACCAATTTTACAT
GGAAACATCACAAAATATGGCTAAATATCAAGGGTTGACGACAGCTGGTAAAGAGATCAAAATGGACTATCTGGGAGTTT
ATGTCCTACAGGTGGCTGATAACTCAACCTTCAAGGGAGTTCTCAATATTGCTGATACGGTAACTGGTGTCAATGATAAG
ACGTTTGAAAGCTCTGAGGAGCTGGTTAAGTATGTCAACTCGCAGAAGCTTGGGGATAAAATCAAGGTGACTTTCCAAGA
AGATGGTCAGGAGAAATCGGCAACTGGTAAGGTTATCAAGTTGGAGAACGGTAAGAACGGGATTGGGATTAGTCTGATAG
ACCGGACGGAAGTCAGCAGTAATATTCCGATTACATTTTCAACTGAGGGTATCGGCGGTCCTAGTGCTGGTCTCATGTTC
AGCCTCGCCATTTATACCCAGTTGGCTGATCCGACCCTTCGTGATGGCCGCGATATTGCAGGGACCGGAAGCATCAGTCG
GGAAGGTGAAGTTGGCGAAATCGGCGGAATTGATAAGAAAGTTGTTTCAGCGGCCCAAAGCGGAGCAGATATCTTCTTTG
CACCGAACAATGAACTGACAGAAGAAGAGAAGAAGCTTTCTCCTAATGGGAAAAACAACTACCAAACGGCTCTGGAGACA
GCCAAGAAGATTAAAACGGATATGAAAATTGTTCCAGTTAAAACGCTGCAGGACGCCATTGATTATCTAAAAAAGAACAA
ATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

57.803

99.712

0.576


Multiple sequence alignment