Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL21_RS08985 Genome accession   NZ_LS483343
Coordinates   1739841..1740551 (+) Length   236 a.a.
NCBI ID   WP_018030523.1    Uniprot ID   A0A2X3VIR7
Organism   Streptococcus ferus strain NCTC12278     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734841..1745551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL21_RS08970 (NCTC12278_01801) - 1734905..1735942 (+) 1038 WP_018030526.1 dihydrodipicolinate reductase -
  DQL21_RS08975 (NCTC12278_01802) treC 1736027..1737649 (-) 1623 WP_018030525.1 alpha,alpha-phosphotrehalase -
  DQL21_RS08980 (NCTC12278_01803) treP 1737714..1739675 (-) 1962 WP_018030524.1 PTS system trehalose-specific EIIBC component -
  DQL21_RS08985 (NCTC12278_01804) treR 1739841..1740551 (+) 711 WP_018030523.1 trehalose operon repressor Regulator
  DQL21_RS08990 (NCTC12278_01805) dtd 1740705..1741148 (-) 444 WP_026161954.1 D-aminoacyl-tRNA deacylase -
  DQL21_RS08995 (NCTC12278_01806) - 1741154..1743373 (-) 2220 WP_018030521.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27451.47 Da        Isoelectric Point: 6.7629

>NTDB_id=1137616 DQL21_RS08985 WP_018030523.1 1739841..1740551(+) (treR) [Streptococcus ferus strain NCTC12278]
MKKYESIFHDLEEQINKGIYAVDDYLPAEMELCQTYGASRDTIRKALKLLSKSGLIQKTQGRGSKVIQHQQINFPVSELT
SYRELVDQLGMASITNVIAIDKIIVDDKLSQLTGFPPNNLVWRIMRQRVVDQVASVLDIDYLRKDFVPDISRQIAEHSIY
DYLENQLQLTIAYAQKEITIEPITETDKLLLDLDDEHHVVSVKSKVYLADNKQFQFTESRHKLEKFRFVDFARRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1137616 DQL21_RS08985 WP_018030523.1 1739841..1740551(+) (treR) [Streptococcus ferus strain NCTC12278]
ATGAAGAAATACGAAAGCATTTTTCATGATTTAGAGGAACAGATTAATAAAGGAATCTATGCTGTTGATGACTATCTTCC
CGCTGAAATGGAACTCTGTCAGACTTATGGCGCCAGCCGCGACACTATTCGGAAGGCCTTGAAGCTGCTCAGTAAATCTG
GTCTGATTCAAAAGACACAAGGGCGAGGTTCAAAGGTCATCCAACACCAGCAAATCAACTTTCCTGTCTCTGAGCTAACC
AGTTACAGAGAATTAGTCGATCAGCTAGGCATGGCTTCCATTACCAATGTCATCGCTATTGATAAAATCATCGTCGACGA
CAAACTCAGTCAGCTGACAGGCTTTCCGCCGAACAATCTGGTCTGGCGAATCATGCGACAGAGGGTGGTAGACCAGGTTG
CCTCTGTTTTAGACATTGACTATTTACGGAAGGATTTTGTTCCTGATATTTCTAGACAAATTGCTGAACATTCAATCTAT
GACTATCTTGAAAATCAGCTGCAGCTGACAATTGCCTATGCGCAAAAGGAAATCACCATCGAACCCATTACCGAGACGGA
CAAGCTTCTTTTAGACCTAGATGATGAACACCATGTAGTTTCCGTCAAGTCAAAAGTCTATCTGGCAGACAATAAACAAT
TCCAATTCACCGAAAGTCGGCATAAACTGGAAAAATTCCGCTTTGTTGATTTTGCCAGACGAAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3VIR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

69.068

100

0.691

Multiple sequence alignment