Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQL21_RS08615 Genome accession   NZ_LS483343
Coordinates   1658578..1659942 (-) Length   454 a.a.
NCBI ID   WP_051048381.1    Uniprot ID   -
Organism   Streptococcus ferus strain NCTC12278     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1653578..1664942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL21_RS08590 (NCTC12278_01721) - 1654373..1654915 (-) 543 WP_018030605.1 hypothetical protein -
  DQL21_RS08595 (NCTC12278_01722) - 1654988..1655512 (-) 525 WP_018030604.1 transcription repressor NadR -
  DQL21_RS08600 (NCTC12278_01723) gltX 1655631..1657088 (-) 1458 WP_018030603.1 glutamate--tRNA ligase -
  DQL21_RS08605 (NCTC12278_01724) - 1657190..1657897 (-) 708 WP_018030602.1 TIGR00266 family protein -
  DQL21_RS08610 (NCTC12278_01725) - 1657993..1658487 (-) 495 WP_018030601.1 carbonic anhydrase -
  DQL21_RS08615 (NCTC12278_01726) radA 1658578..1659942 (-) 1365 WP_051048381.1 DNA repair protein RadA Machinery gene
  DQL21_RS08620 (NCTC12278_01727) - 1659954..1661123 (-) 1170 WP_040803918.1 macrolide family glycosyltransferase -
  DQL21_RS08625 (NCTC12278_01728) - 1661096..1661590 (-) 495 WP_018030598.1 isochorismatase family protein -
  DQL21_RS08630 (NCTC12278_01729) - 1661597..1662043 (-) 447 WP_018030597.1 dUTP diphosphatase -
  DQL21_RS08635 (NCTC12278_01730) - 1662106..1662465 (-) 360 WP_018030596.1 YbaN family protein -
  DQL21_RS08640 (NCTC12278_01731) - 1662633..1663238 (+) 606 WP_018030595.1 NADPH-dependent FMN reductase -
  DQL21_RS08645 (NCTC12278_01732) - 1663250..1664476 (+) 1227 WP_018030594.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49510.78 Da        Isoelectric Point: 5.8708

>NTDB_id=1137614 DQL21_RS08615 WP_051048381.1 1658578..1659942(-) (radA) [Streptococcus ferus strain NCTC12278]
MAKKKTSFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARVSLTGEKTKPIKLNQVTSSQVARTKTDMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLADKGTVLYVSGEESAEQIKLRSERLGDIDNAFYLYAETNMQAIRAEIE
KLQPDFLIIDSIQTIMSPEITSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSQVFLEERLEGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRASLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEQPTNPQECYIGEIGLTGEIR
RVNRLEQRIKEASKLGFTKIYVPKNALSGLEIPNNTQVIGAATVGEVLKHVFST

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1137614 DQL21_RS08615 WP_051048381.1 1658578..1659942(-) (radA) [Streptococcus ferus strain NCTC12278]
ATCGCTAAGAAAAAAACAAGTTTTGTTTGCCAGGAGTGCGGGTATAATTCCCCTAAATATTTGGGGCGCTGTCCTAATTG
CTCTTCCTGGTCCTCATTCGTGGAAGAAGTTGAGGTTGCCGAAGTCAAGAATGCGCGGGTATCTCTAACCGGTGAAAAAA
CGAAACCCATTAAACTAAATCAGGTCACCTCTAGTCAGGTGGCTCGTACGAAAACGGATATGGAAGAATTCAACCGTGTG
CTTGGTGGAGGTGTCGTTCCAGGATCCCTAGTCCTGATTGGCGGTGACCCTGGGATTGGCAAGTCAACCTTGCTTTTGCA
AGTCTCTACCCAGTTGGCGGATAAAGGAACGGTTTTATATGTTTCCGGTGAGGAATCAGCAGAACAAATTAAGCTGCGGT
CAGAACGTCTGGGAGATATTGACAATGCGTTTTATCTCTATGCTGAGACCAATATGCAGGCCATTCGGGCTGAAATTGAA
AAATTACAGCCAGATTTCCTGATTATTGATTCGATACAGACCATTATGAGTCCCGAAATAACAAGTGTTCAGGGTTCTGT
CAGTCAGGTCAGGGAAGTGACCGCCGAATTGATGCAGCTGGCCAAGACCAACAATATTGCGACTTTTATTGTCGGTCACG
TGACCAAGGAAGGGACTTTGGCGGGTCCTCGTATGCTAGAGCATATGGTGGATACCGTTCTTTATTTTGAAGGGGAGCGT
CAGCACACCTTTCGTATCCTACGGGCAGTCAAAAACCGTTTTGGATCGACCAATGAGATTGGTATTTTTGAGATGCAGTC
TCAAGGTTTGGTCGAAGTCCTCAACCCCAGTCAGGTCTTTTTAGAGGAGCGGCTAGAAGGGGCAACTGGTTCAGCCATCG
TCGTGACTATGGAGGGAAGCAGGCCGATTCTAGCTGAAGTCCAAGCTCTGGTCACACCGACAGTCTTTGGCAATGCCAAG
CGGACGACAACGGGGCTTGATTTCAACCGTGCCAGTCTTATTATGGCTGTTCTTGAGAAGCGTTGCGGTCTCCTTCTGCA
AAATCAGGATGCTTACCTCAAATCGGCCGGTGGGGTCAAATTAGATGAACCAGCTATTGATTTGGCTGTTGCGGTTGCTA
TTGCATCAAGCTATAAGGAGCAGCCAACCAATCCACAGGAGTGCTATATCGGAGAAATCGGGCTGACAGGAGAAATTCGT
CGAGTCAATCGCTTGGAGCAAAGAATCAAAGAAGCCAGTAAACTAGGTTTTACCAAAATTTATGTTCCTAAAAATGCCCT
CTCAGGTTTAGAAATTCCGAACAATACTCAAGTTATTGGTGCAGCTACAGTTGGTGAGGTTCTAAAGCATGTTTTCTCGA
CATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

87.859

99.78

0.877
  radA Streptococcus pneumoniae D39

87.859

99.78

0.877
  radA Streptococcus pneumoniae R6

87.859

99.78

0.877
  radA Streptococcus pneumoniae TIGR4

87.859

99.78

0.877
  radA Streptococcus mitis SK321

87.859

99.78

0.877
  radA Streptococcus mitis NCTC 12261

87.638

99.78

0.874
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

99.78

0.612

Multiple sequence alignment