Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQL23_RS04810 Genome accession   NZ_LS483341
Coordinates   1010152..1011954 (+) Length   600 a.a.
NCBI ID   WP_060554157.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1005152..1016954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04780 (NCTC7865_00957) - 1005531..1005848 (+) 318 WP_060554151.1 PTS cellobiose transporter subunit IIA -
  DQL23_RS04785 (NCTC7865_00958) - 1005876..1006361 (+) 486 WP_060554152.1 hypothetical protein -
  DQL23_RS04790 (NCTC7865_00959) celB 1006382..1007737 (+) 1356 WP_060554153.1 PTS cellobiose transporter subunit IIC -
  DQL23_RS04795 (NCTC7865_00960) coiA 1007830..1008816 (+) 987 WP_060554154.1 competence protein CoiA Machinery gene
  DQL23_RS04800 (NCTC7865_00961) - 1008971..1009375 (+) 405 WP_060554155.1 DUF1310 family protein -
  DQL23_RS04805 (NCTC7865_00962) - 1009577..1009963 (+) 387 WP_060554156.1 DUF1310 family protein -
  DQL23_RS04810 (NCTC7865_00963) pepF 1010152..1011954 (+) 1803 WP_060554157.1 oligoendopeptidase F Regulator
  DQL23_RS04815 (NCTC7865_00964) - 1011956..1012642 (+) 687 WP_060554158.1 O-methyltransferase -
  DQL23_RS04820 (NCTC7865_00965) prsA 1012845..1013774 (+) 930 WP_012130637.1 peptidylprolyl isomerase PrsA -
  DQL23_RS04830 (NCTC7865_00967) - 1014004..1014489 (+) 486 WP_008809505.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69386.41 Da        Isoelectric Point: 4.4968

>NTDB_id=1137491 DQL23_RS04810 WP_060554157.1 1010152..1011954(+) (pepF) [Streptococcus gordonii strain NCTC7865]
MAKQRNEIEEKYTWDLSTIFPTDEAFETELAQVSEELKNASNLAGHLLDSAESLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTIYSEFGQTFAFYEPEFMEITEDQYQAFLAEKPELQTYQHYFDKLLQKKEHILTQREEELLAGA
GEIFGAASETFAILDNADIVFPVVHNEKGEEVQLTHGNYISLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVQ
NYNAKVRKFSSAREAALSANFIPESVYDSLVSAVDKHLPLLQRYIALRAKILGISDLKMYDVYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNLQIQFEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1137491 DQL23_RS04810 WP_060554157.1 1010152..1011954(+) (pepF) [Streptococcus gordonii strain NCTC7865]
ATGGCTAAACAAAGAAATGAAATTGAAGAAAAATATACATGGGATTTAAGTACGATTTTCCCTACAGATGAAGCCTTTGA
GACTGAACTTGCACAGGTTTCTGAAGAATTAAAAAATGCAAGTAATCTAGCAGGACATCTGCTGGATTCGGCAGAAAGTC
TTTTGACAACAACGGAAATTCAATTAGACTTGATGCGCCGTATTGAGAAACTTTATTCTTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTGGCAAAATATCAGGAATACCAAGCTAAAGGAATGACTATTTACAGTGAGTTTGGCCAAACTTTTGC
TTTCTATGAGCCAGAATTCATGGAAATTACAGAAGACCAATACCAAGCTTTTTTGGCTGAAAAACCTGAACTACAAACTT
ATCAACATTATTTTGATAAGCTTTTGCAGAAGAAGGAACACATCCTGACCCAGCGTGAAGAGGAGTTGTTGGCTGGTGCT
GGAGAAATCTTTGGTGCTGCCAGTGAAACCTTTGCTATTTTGGACAATGCGGATATCGTCTTTCCAGTAGTTCACAATGA
AAAGGGCGAAGAAGTCCAGTTGACACATGGGAACTATATTTCTCTAGTAGAGTCTAAAAATCGAGAAGTTCGTAAGGAAG
CTTATGAAGCTCTTTATAGTGTTTATGAGCAGTATCAGCATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTTCAA
AATTACAACGCTAAAGTCCGCAAGTTCTCATCTGCCCGTGAGGCGGCTTTATCGGCTAACTTTATCCCGGAAAGTGTCTA
TGATAGCTTGGTTTCTGCTGTAGATAAACACCTTCCTCTGTTACAACGTTATATTGCCTTGCGAGCAAAGATTTTGGGTA
TTTCTGATTTGAAGATGTACGATGTTTATACACCACTATCAGAGACAGACTACAAATTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCAATTTTGGGTGAGGATTATTTGAGTCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTTATGAAAATCAAGGTAAGCGCTCAGGAGCATACTCGGGTGGCTCTTATGATACCAATGCCTTTATGTTGCTTAACT
GGCAGGATACACTAGATAATCTCTTTACTTTGGTGCATGAGACAGGCCACAGTATGCACTCCAGTTATACTCGTGAGACC
CAGCCTTATGTTTACGGAGACTATTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCCTGACAGAGAA
GCTCTTGGAAGAAGTAGAAGACGATGCAACCCGATTTGCGATTCTTAATCACTTTTTGGATGGCTTTAGAGGAACGGTCT
TCCGTCAAACTCAGTTTGCTGAGTTCGAGCATGCTATCCACAAGGCTGACCAAGAAGGACAAGTGTTGACTAGCGAGTTT
CTCAATGAGCTATATGCAGACTTAAACGAGAAATACTACGGCTTGAAAAAAGAAGACAATCTGCAGATTCAGTTCGAATG
GGCACGGATTCCTCACTTCTACTATAATTATTATGTTTTCCAATACTCTACAGGATTTGCAGCTGCCTCGGCCTTGGCTG
AAAAGATTGTCCATGGTAGCCAAGAAGACAAGGACAAATATCTGGACTATCTCAAAGCTGGGAACTCTGACTATCCTCTC
AATGTCATCAAAAAAGCAGGTGTGGATATGGAAAAAGAAGACTATCTAAATGCTGCCTTTGCAGTCTTCGAACGCCGCTT
GGATGAATTTGAAGCTTTGGTAGAAAAGTTGGGATTAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.792

99.333

0.683

Multiple sequence alignment