Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL23_RS04425 Genome accession   NZ_LS483341
Coordinates   924187..924897 (-) Length   236 a.a.
NCBI ID   WP_045504045.1    Uniprot ID   A0AAW3H7I3
Organism   Streptococcus gordonii strain NCTC7865     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 919187..929897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04410 (NCTC7865_00884) - 919491..920615 (+) 1125 WP_045504054.1 AI-2E family transporter -
  DQL23_RS04415 (NCTC7865_00885) - 920715..922361 (+) 1647 WP_060554113.1 phosphoenolpyruvate carboxykinase (ATP) -
  DQL23_RS04420 (NCTC7865_00886) - 922453..923793 (+) 1341 WP_060554114.1 hemolysin family protein -
  DQL23_RS04425 (NCTC7865_00887) treR 924187..924897 (-) 711 WP_045504045.1 trehalose operon repressor Regulator
  DQL23_RS04430 (NCTC7865_00888) treP 925077..926621 (+) 1545 WP_398576983.1 PTS system trehalose-specific EIIBC component -
  DQL23_RS11000 (NCTC7865_00889) - 926633..927085 (+) 453 Protein_869 PTS sugar transporter subunit IIA -
  DQL23_RS04435 (NCTC7865_00890) treC 927221..928846 (+) 1626 WP_060554115.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27612.76 Da        Isoelectric Point: 9.5008

>NTDB_id=1137486 DQL23_RS04425 WP_045504045.1 924187..924897(-) (treR) [Streptococcus gordonii strain NCTC7865]
MKKYQQLFKLIEQDILSEKYPVGEFLPSENELTQIYKVSRDTVRKALEQLQKEGLIQKFKGQGSKIVKQEHINFPISNLT
SYQELVLQNKLDSKTNVISLEKITVDKKLAKLTGFPEYRLVWRIVRQRVVDQVASVLDIDYLDKELVPTMTREIAEHSIY
HFIENNLGLSIDYAKKEITIDHATSRDKILLDIERESHVVSVKSQVYLANGQQFQFTDSRHKLDKFRFVDFAKRHG

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1137486 DQL23_RS04425 WP_045504045.1 924187..924897(-) (treR) [Streptococcus gordonii strain NCTC7865]
ATGAAGAAATACCAACAATTATTCAAACTAATCGAGCAAGATATCCTGAGCGAGAAATACCCCGTTGGTGAATTTTTGCC
AAGCGAGAATGAATTAACTCAGATTTATAAAGTCAGCCGTGATACTGTCCGAAAAGCTCTGGAGCAACTTCAAAAAGAAG
GATTAATCCAAAAATTTAAGGGACAAGGATCCAAAATCGTCAAACAGGAACACATCAATTTTCCAATCTCCAATCTGACT
AGCTACCAGGAACTCGTCCTACAAAATAAACTAGACTCTAAAACCAATGTCATCAGCCTAGAAAAGATAACCGTAGATAA
AAAACTTGCTAAGCTAACTGGTTTTCCGGAATATCGCTTGGTTTGGCGAATTGTTCGACAAAGAGTTGTTGATCAGGTTG
CTTCCGTCCTTGATATTGATTATTTGGATAAAGAGCTTGTTCCTACGATGACGAGAGAAATTGCAGAGCATTCTATCTAT
CATTTCATTGAAAACAATCTTGGACTTAGCATCGACTATGCAAAAAAGGAAATCACCATTGATCATGCAACCAGTCGGGA
TAAAATTTTGCTCGATATTGAGAGAGAAAGCCATGTCGTTTCCGTCAAATCTCAGGTTTATTTGGCGAACGGACAACAAT
TTCAGTTCACAGACAGCAGACACAAACTCGATAAATTTCGCTTTGTTGATTTTGCTAAAAGGCACGGTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-65)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.255

99.576

0.64

Multiple sequence alignment