Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL23_RS02510 Genome accession   NZ_LS483341
Coordinates   537014..537745 (+) Length   243 a.a.
NCBI ID   WP_060552971.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 532014..542745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS02480 (NCTC7865_00493) - 532403..533827 (+) 1425 WP_045505861.1 NCS2 family permease -
  DQL23_RS02485 (NCTC7865_00494) tsaE 533910..534356 (+) 447 WP_060552975.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL23_RS02490 (NCTC7865_00495) - 534356..534880 (+) 525 WP_060552974.1 GNAT family N-acetyltransferase -
  DQL23_RS02495 (NCTC7865_00496) brpA 534887..536098 (+) 1212 WP_060552973.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL23_RS02500 (NCTC7865_00497) - 536146..536448 (-) 303 WP_008808540.1 hypothetical protein -
  DQL23_RS02505 (NCTC7865_00498) - 536459..536875 (-) 417 WP_060552972.1 HIT family protein -
  DQL23_RS02510 (NCTC7865_00499) pptA 537014..537745 (+) 732 WP_060552971.1 ABC transporter ATP-binding protein Regulator
  DQL23_RS02515 (NCTC7865_00500) pptB 537742..538797 (+) 1056 WP_060552970.1 ABC transporter permease Regulator
  DQL23_RS02520 (NCTC7865_00501) ccrZ 538838..539632 (+) 795 WP_008808544.1 cell cycle regulator CcrZ -
  DQL23_RS02525 (NCTC7865_00502) trmB 539629..540264 (+) 636 WP_045505881.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL23_RS02530 (NCTC7865_00503) rimP 540376..540864 (+) 489 WP_012000044.1 ribosome maturation factor RimP -
  DQL23_RS02535 (NCTC7865_00504) nusA 540910..542151 (+) 1242 WP_060553305.1 transcription termination factor NusA -
  DQL23_RS02540 (NCTC7865_00505) rnpM 542162..542458 (+) 297 WP_008808548.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26831.25 Da        Isoelectric Point: 4.5658

>NTDB_id=1137452 DQL23_RS02510 WP_060552971.1 537014..537745(+) (pptA) [Streptococcus gordonii strain NCTC7865]
MLEIKGLTGGYVNIPVLKDVSFEVGDGQLVGLIGLNGAGKSTTINEIIGLLTPYQGEILIDGLSLKSDRTAYRKKIGFIP
ETPSLYEELTLKEHIETVAMAYDIDSQTAIDRVDKLLQVFRLKDKLDWFPVNFSKGMKQKVMIICAFVIDPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGNLAQLREEFSLPEASLNEIYLALTEE
AAL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1137452 DQL23_RS02510 WP_060552971.1 537014..537745(+) (pptA) [Streptococcus gordonii strain NCTC7865]
ATGTTAGAAATAAAAGGGCTTACAGGTGGCTATGTCAATATTCCTGTTTTGAAAGATGTCAGTTTTGAAGTTGGAGACGG
TCAGCTTGTTGGACTGATTGGTCTAAACGGGGCTGGAAAGTCAACAACCATCAATGAAATAATCGGTCTCTTGACGCCTT
ATCAAGGAGAAATTTTGATAGATGGTTTGAGCCTGAAGTCAGACAGGACAGCCTATCGCAAAAAGATTGGTTTTATCCCT
GAAACACCGAGTCTCTATGAAGAATTAACCTTGAAGGAACATATTGAGACGGTTGCTATGGCCTATGATATTGACTCGCA
AACAGCTATAGATCGAGTAGATAAATTACTTCAGGTCTTTCGTCTTAAAGACAAGTTAGATTGGTTTCCGGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTTATGATCATCTGTGCCTTTGTGATTGACCCTAGTTTGTTTATTGTGGATGAACCCTTT
TTAGGATTGGATCCTCTGGCCATCTCCGATTTGATTGAGCTCTTGGCAGAAGAAAAGGCTAAAGGGAAGTCTATCCTGAT
GAGTACTCATGTGCTTGATTCGGCAGAGAAAATGTGTGATTCTTTTGTTATCTTGCACAAGGGTCAGGTACGGGCTAAAG
GAAATTTAGCACAGTTGAGAGAAGAATTTTCATTGCCAGAAGCAAGTCTCAATGAAATCTACCTAGCTTTGACAGAAGAG
GCTGCCCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

98.354

0.733
  pptA Streptococcus thermophilus LMD-9

73.64

98.354

0.724

Multiple sequence alignment