Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQL23_RS00765 Genome accession   NZ_LS483341
Coordinates   165808..167169 (+) Length   453 a.a.
NCBI ID   WP_081041919.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 160808..172169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS00725 (NCTC7865_00146) - 160915..162684 (+) 1770 WP_060553201.1 ABC transporter ATP-binding protein -
  DQL23_RS00730 (NCTC7865_00147) - 162863..163552 (+) 690 WP_045634457.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQL23_RS00740 (NCTC7865_00148) - 163816..164265 (+) 450 WP_060553200.1 8-oxo-dGTP diphosphatase -
  DQL23_RS00750 (NCTC7865_00149) - 164350..164793 (+) 444 WP_060553199.1 dUTP diphosphatase -
  DQL23_RS00755 (NCTC7865_00150) - 164803..165261 (+) 459 WP_060553198.1 isochorismatase family cysteine hydrolase -
  DQL23_RS00760 (NCTC7865_00151) - 165280..165795 (+) 516 WP_060553197.1 histidine phosphatase family protein -
  DQL23_RS00765 (NCTC7865_00152) radA 165808..167169 (+) 1362 WP_081041919.1 DNA repair protein RadA Machinery gene
  DQL23_RS00770 (NCTC7865_00153) - 167282..167992 (+) 711 WP_008808197.1 TIGR00266 family protein -
  DQL23_RS00775 (NCTC7865_00154) - 168074..168559 (+) 486 WP_045505265.1 GNAT family N-acetyltransferase -
  DQL23_RS10850 - 168708..168827 (+) 120 Protein_153 TIGR00266 family protein -
  DQL23_RS00785 (NCTC7865_00155) - 168964..169458 (+) 495 WP_060553196.1 beta-class carbonic anhydrase -
  DQL23_RS00790 (NCTC7865_00156) gltX 169608..171065 (+) 1458 WP_060553195.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49504.80 Da        Isoelectric Point: 5.7873

>NTDB_id=1137449 DQL23_RS00765 WP_081041919.1 165808..167169(+) (radA) [Streptococcus gordonii strain NCTC7865]
MAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTEIE
KIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIR
RVNRIEQRINEAAKLGFTKVYAPKNSLSGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1137449 DQL23_RS00765 WP_081041919.1 165808..167169(+) (radA) [Streptococcus gordonii strain NCTC7865]
ATCGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCCAAGTATCTAGGCCGCTGTCCTAATTG
TGGAGCGTGGTCTTCTTTTGTTGAGGAAGTAGAGGCTGCAGAAGTCAAGCATGCTCGTGTTTCCTTGACAGGTGAAAAGA
CTCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAATCGGACCAAGACGGAAATGGACGAGTTTAATCGTGTG
CTGGGTGGTGGAGTCGTGCCTGGCAGTCTGGTTCTGATTGGTGGGGATCCTGGTATTGGGAAGTCTACCCTGCTTCTGCA
AGTATCAACCCAGCTTTCTCATCAGGGCACCGTCCTTTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGTTGCGGG
CGGAACGCCTCGGTGATATTGACAGTGAATTTTACCTCTACGCTGAGACCAATATGCAAAATATCCGCACAGAGATTGAG
AAAATCAAGCCAGATTTTCTGATTATCGACTCTATACAGACGGTGATGTCGCCGGAAATTTCCAGTGTCCAAGGCTCTGT
TTCTCAGGTCCGAGAGGTGACAGCCGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATTGTTGGTCACA
TGACCAAGGAAGGAACCTTAGCTGGTCCTCGGACGCTAGAGCACATGGTGGATACCGTGCTTTATTTTGAGGGTGAACGT
CAGCATACTTTCCGTATCTTGAGAGCAGTCAAGAACCGTTTTGGCTCGACCAATGAGATTGGCATTTTTGAGATGCAATC
TGGCGGGCTAGTTGAGGTTGTCAATCCCAGTGAAGTCTTTTTAGAAGAGCGCCTGGACGGCGCGACAGGATCTTCTATTG
TCGTGACCATGGAAGGAACGCGGCCAATTTTAGCAGAGGTGCAGGCTTTGGTGACACCGACCATGTTTGGCAATGCCAAG
CGAACCACGACCGGACTGGACTTTAACCGAGCTAGCCTCATCATGGCGGTTCTGGAAAAACGGGCAGGACTCCTCCTGCA
AAATCAAGACGCCTACCTCAAATCAGCTGGTGGTGTCAAGCTAGATGAACCAGCCATTGATTTAGCAGTAGCGGTAGCCA
TTGCCTCCAGCTACAAAGATTTGCCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGAGAAATCCGT
CGAGTCAATCGCATCGAGCAGCGTATCAACGAAGCAGCAAAGCTGGGCTTTACCAAAGTCTACGCTCCTAAAAACTCTCT
GAGTGGCCTCAAAGTTCCAGATAATATCCAAGTCATTGGTGTGACAACGATTGGGGAAGTCTTAAAGAAAGTATTTTCTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.611

100

0.916
  radA Streptococcus pneumoniae D39

91.391

100

0.914
  radA Streptococcus pneumoniae R6

91.391

100

0.914
  radA Streptococcus pneumoniae Rx1

91.391

100

0.914
  radA Streptococcus mitis SK321

91.391

100

0.914
  radA Streptococcus pneumoniae TIGR4

91.391

100

0.914
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629

Multiple sequence alignment