Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL04_RS08770 Genome accession   NZ_LS483340
Coordinates   1730157..1730870 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus pyogenes strain NCTC12062     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1725157..1735870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL04_RS08760 (NCTC12062_01735) treC 1726226..1727854 (-) 1629 WP_021733072.1 alpha,alpha-phosphotrehalase -
  DQL04_RS08765 (NCTC12062_01736) treP 1727922..1729946 (-) 2025 WP_047236043.1 PTS system trehalose-specific EIIBC component -
  DQL04_RS08770 (NCTC12062_01737) treR 1730157..1730870 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  DQL04_RS08780 (NCTC12062_01738) - 1731149..1731486 (-) 338 Protein_1623 winged helix-turn-helix transcriptional regulator -
  DQL04_RS08785 (NCTC12062_01739) - 1731673..1732530 (+) 858 WP_047236044.1 VOC family protein -
  DQL04_RS08790 (NCTC12062_01740) yaaA 1732572..1733303 (+) 732 WP_012561068.1 peroxide stress protein YaaA -
  DQL04_RS08795 (NCTC12062_01741) nrdG 1733477..1734091 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQL04_RS08800 (NCTC12062_01742) - 1734091..1734600 (-) 510 WP_047236045.1 GNAT family N-acetyltransferase -
  DQL04_RS08805 (NCTC12062_01743) - 1734609..1735544 (-) 936 WP_047236046.1 Gfo/Idh/MocA family protein -
  DQL04_RS09385 (NCTC12062_01744) - 1735573..1735719 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1137443 DQL04_RS08770 WP_002982243.1 1730157..1730870(+) (treR) [Streptococcus pyogenes strain NCTC12062]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1137443 DQL04_RS08770 WP_002982243.1 1730157..1730870(+) (treR) [Streptococcus pyogenes strain NCTC12062]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment