Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQL04_RS07040 Genome accession   NZ_LS483340
Coordinates   1380328..1381137 (-) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12062     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375328..1386137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL04_RS07030 (NCTC12062_01405) smc 1375642..1379181 (-) 3540 WP_111698621.1 chromosome segregation protein SMC -
  DQL04_RS07035 (NCTC12062_01406) rnc 1379182..1379874 (-) 693 WP_002990670.1 ribonuclease III -
  DQL04_RS07040 (NCTC12062_01407) vicX 1380328..1381137 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQL04_RS07045 (NCTC12062_01408) vicK 1381141..1382493 (-) 1353 WP_002990673.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQL04_RS07050 (NCTC12062_01409) vicR 1382486..1383196 (-) 711 WP_002985645.1 response regulator YycF Regulator
  DQL04_RS07055 (NCTC12062_01410) - 1383358..1384392 (-) 1035 WP_172448820.1 DUF3114 domain-containing protein -
  DQL04_RS07060 (NCTC12062_01411) - 1384448..1385695 (-) 1248 WP_111698624.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=1137433 DQL04_RS07040 WP_002985641.1 1380328..1381137(-) (vicX) [Streptococcus pyogenes strain NCTC12062]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1137433 DQL04_RS07040 WP_002985641.1 1380328..1381137(-) (vicX) [Streptococcus pyogenes strain NCTC12062]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment