Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   OB04_RS11520 Genome accession   NZ_CP009796
Coordinates   2246842..2248332 (-) Length   496 a.a.
NCBI ID   WP_038429218.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2241842..2253332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS11490 (OB04_02252) gudB 2241986..2243260 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  OB04_RS11495 (OB04_02253) mecB 2243416..2244000 (-) 585 WP_003230533.1 genetic competence negative regulator -
  OB04_RS11500 (OB04_02254) ypbG 2244159..2244938 (-) 780 WP_003230532.1 metallophosphoesterase -
  OB04_RS11505 (OB04_02255) ypbF 2245025..2245468 (-) 444 WP_029317972.1 YpbF family protein -
  OB04_RS11510 (OB04_02256) claE 2245531..2246262 (-) 732 WP_038429216.1 LysM peptidoglycan-binding domain-containing protein -
  OB04_RS11515 (OB04_02257) ypbD 2246213..2246815 (-) 603 WP_038429217.1 CPBP family intramembrane glutamic endopeptidase -
  OB04_RS11520 (OB04_02258) recS 2246842..2248332 (-) 1491 WP_038429218.1 ATP-dependent DNA helicase RecQ Machinery gene
  OB04_RS11525 (OB04_02259) gmmB 2248325..2249383 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  OB04_RS11530 (OB04_02260) fdxA 2249649..2249897 (+) 249 WP_003225461.1 ferredoxin -
  OB04_RS11535 (OB04_02261) fmnP 2249937..2250509 (-) 573 WP_038429219.1 riboflavin transporter FmnP -
  OB04_RS11545 (OB04_02262) serA 2251006..2252583 (+) 1578 WP_038429220.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56556.15 Da        Isoelectric Point: 6.5044

>NTDB_id=113741 OB04_RS11520 WP_038429218.1 2246842..2248332(-) (recS) [Bacillus subtilis strain SG6]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGRPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAVDTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=113741 OB04_RS11520 WP_038429218.1 2246842..2248332(-) (recS) [Bacillus subtilis strain SG6]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCGCCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994