Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQL04_RS01210 Genome accession   NZ_LS483340
Coordinates   211452..212813 (+) Length   453 a.a.
NCBI ID   WP_111698541.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 206452..217813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL04_RS01195 (NCTC12062_00239) - 208146..209930 (+) 1785 WP_047235639.1 ABC transporter ATP-binding protein -
  DQL04_RS01200 (NCTC12062_00240) - 210048..210815 (+) 768 WP_011054158.1 epoxyqueuosine reductase QueH -
  DQL04_RS01205 (NCTC12062_00242) - 210925..211371 (+) 447 WP_002986111.1 dUTP diphosphatase -
  DQL04_RS01210 (NCTC12062_00243) radA 211452..212813 (+) 1362 WP_111698541.1 DNA repair protein RadA Machinery gene
  DQL04_RS01215 (NCTC12062_00244) - 213002..213499 (+) 498 WP_011017310.1 beta-class carbonic anhydrase -
  DQL04_RS01220 (NCTC12062_00245) - 213630..214340 (+) 711 WP_011017311.1 TIGR00266 family protein -
  DQL04_RS01225 (NCTC12062_00246) gltX 214522..215967 (+) 1446 WP_047235640.1 glutamate--tRNA ligase -
  DQL04_RS01230 (NCTC12062_00247) - 216361..217707 (+) 1347 WP_047235641.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49358.62 Da        Isoelectric Point: 6.0962

>NTDB_id=1137406 DQL04_RS01210 WP_111698541.1 211452..212813(+) (radA) [Streptococcus pyogenes strain NCTC12062]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYIKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1137406 DQL04_RS01210 WP_111698541.1 211452..212813(+) (radA) [Streptococcus pyogenes strain NCTC12062]
ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAGTATTTAGGGCGCTGTCCAAATTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT
CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTGACATGTCTGAATTTAATAGAGTT
CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCAGGTATTGGAAAATCCACCTTACTCTTGCA
GGTATCTACGCAGCTCGCTAATAAGGGAACGGTTCTCTATGCGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGTGATATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAAGCTATTCGCACAGAAATTGAA
AATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCATGAGCCCTGATATTACAGGTGTTCAAGGATCAGT
CAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGACGAACAACATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATTGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGTTGTGGTTTACTCTTACA
AAATCAAGATGCCTACATCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA
TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGCTTTACCAAGGTCTATGCTCCTAAAAATGCCTT
GCAAGGCATTGATATCCCTCAAGGTATTGAGGTTGTTGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(56-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

85.43

100

0.854
  radA Streptococcus pneumoniae D39

85.21

100

0.852
  radA Streptococcus pneumoniae R6

85.21

100

0.852
  radA Streptococcus pneumoniae Rx1

85.21

100

0.852
  radA Streptococcus mitis SK321

85.21

100

0.852
  radA Streptococcus pneumoniae TIGR4

85.21

100

0.852
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment