Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL34_RS08850 Genome accession   NZ_LS483339
Coordinates   1673314..1674045 (-) Length   243 a.a.
NCBI ID   WP_084829044.1    Uniprot ID   A0A0E2QFV4
Organism   Streptococcus thermophilus strain NCTC12958     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668314..1679045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS08825 (NCTC12958_01865) - 1669378..1670559 (+) 1182 WP_111679681.1 NAD(P)/FAD-dependent oxidoreductase -
  DQL34_RS08835 (NCTC12958_01867) trmB 1670780..1671421 (-) 642 WP_046206494.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL34_RS08840 (NCTC12958_01868) ccrZ 1671431..1672222 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  DQL34_RS08845 (NCTC12958_01869) pptB 1672280..1673314 (-) 1035 WP_372450197.1 ABC transporter permease Regulator
  DQL34_RS08850 (NCTC12958_01870) pptA 1673314..1674045 (-) 732 WP_084829044.1 ABC transporter ATP-binding protein Regulator
  DQL34_RS08855 (NCTC12958_01871) - 1674110..1674535 (+) 426 WP_100273371.1 HIT family protein -
  DQL34_RS08860 (NCTC12958_01872) - 1674532..1674828 (+) 297 WP_084829046.1 hypothetical protein -
  DQL34_RS08865 (NCTC12958_01873) - 1674848..1675198 (-) 351 WP_111679682.1 ribonuclease -
  DQL34_RS08870 (NCTC12958_01874) - 1675236..1675580 (-) 345 WP_100273370.1 hypothetical protein -
  DQL34_RS08875 (NCTC12958_01875) - 1675600..1676097 (-) 498 WP_223899742.1 hypothetical protein -
  DQL34_RS08880 (NCTC12958_01876) - 1676158..1677333 (-) 1176 WP_111679683.1 IS256-like element IS1191 family transposase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26800.96 Da        Isoelectric Point: 4.4600

>NTDB_id=1137379 DQL34_RS08850 WP_084829044.1 1673314..1674045(-) (pptA) [Streptococcus thermophilus strain NCTC12958]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIVIDGLSIQQDSASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMAHADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQVLAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1137379 DQL34_RS08850 WP_084829044.1 1673314..1674045(-) (pptA) [Streptococcus thermophilus strain NCTC12958]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTAGTTGGCCTTATTGGTCTCAATGGTGCCGGAAAATCAACAACAATTAACGAGATTATTGGTCTCTTGACACCCT
ACGGGGGACAGATTGTTATTGATGGTTTGAGCATACAGCAAGATTCGGCTAGCTACCGTCAAAAGATTGGCTACATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACTGTGCTTATGGCATATGGCCTTGATGTTAC
AGAAGGAATGGCACATGCAGACAAGTACCTCAAACTTTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGCGCCTTTATTGTCAACCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGTTTTGTGATTTTGCACCATGGACAGGTCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2QFV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

97.942

100

0.979
  pptA Streptococcus salivarius strain HSISS4

95.885

100

0.959

Multiple sequence alignment