Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQM35_RS09005 Genome accession   NZ_LS483338
Coordinates   54166..54264 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12064     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49166..59264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM35_RS00320 (NCTC12064_00064) - 50032..51372 (+) 1341 WP_002987721.1 hypothetical protein -
  DQM35_RS00325 (NCTC12064_00065) purB 51741..53033 (+) 1293 WP_002986683.1 adenylosuccinate lyase -
  DQM35_RS00330 (NCTC12064_00066) comR 53164..54075 (+) 912 WP_014635220.1 XRE family transcriptional regulator Regulator
  DQM35_RS09005 (NCTC12064_00067) comS 54166..54264 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  DQM35_RS00335 (NCTC12064_00068) ruvB 54295..55293 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  DQM35_RS00340 (NCTC12064_00069) - 55431..55868 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQM35_RS00345 (NCTC12064_00070) - 55891..56292 (+) 402 WP_012560369.1 MORN repeat-containing protein -
  DQM35_RS00350 (NCTC12064_00071) - 56289..58064 (+) 1776 WP_002994672.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=1137331 DQM35_RS09005 WP_020833188.1 54166..54264(+) (comS) [Streptococcus pyogenes strain NCTC12064]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1137331 DQM35_RS09005 WP_020833188.1 54166..54264(+) (comS) [Streptococcus pyogenes strain NCTC12064]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment