Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   OB04_RS09230 Genome accession   NZ_CP009796
Coordinates   1734636..1735067 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SG6     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1729636..1740067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS09210 (OB04_01807) spoVS 1730197..1730457 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  OB04_RS09215 (OB04_01808) tdh 1730723..1731766 (+) 1044 WP_038428982.1 L-threonine 3-dehydrogenase -
  OB04_RS09220 (OB04_01809) kbl 1731779..1732957 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  OB04_RS09225 (OB04_01810) miaB 1733105..1734634 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  OB04_RS09230 (OB04_01811) ymcA 1734636..1735067 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  OB04_RS09235 (OB04_01812) cotE 1735329..1735874 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  OB04_RS09240 (OB04_01813) hexA 1736007..1738583 (+) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=113732 OB04_RS09230 WP_003231834.1 1734636..1735067(+) (ymcA) [Bacillus subtilis strain SG6]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=113732 OB04_RS09230 WP_003231834.1 1734636..1735067(+) (ymcA) [Bacillus subtilis strain SG6]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1