Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM35_RS06815 Genome accession   NZ_LS483338
Coordinates   1328904..1329713 (-) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12064     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323904..1334713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM35_RS06805 (NCTC12064_01349) smc 1324240..1327779 (-) 3540 WP_038431234.1 chromosome segregation protein SMC -
  DQM35_RS06810 (NCTC12064_01350) rnc 1327780..1328472 (-) 693 WP_002985639.1 ribonuclease III -
  DQM35_RS06815 (NCTC12064_01351) vicX 1328904..1329713 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQM35_RS06820 (NCTC12064_01352) vicK 1329717..1331069 (-) 1353 WP_002985643.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM35_RS06825 (NCTC12064_01353) vicR 1331062..1331772 (-) 711 WP_002985645.1 response regulator YycF Regulator
  DQM35_RS06830 (NCTC12064_01354) - 1331934..1332968 (-) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  DQM35_RS06835 (NCTC12064_01355) - 1333024..1334271 (-) 1248 WP_009880281.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=1137316 DQM35_RS06815 WP_002985641.1 1328904..1329713(-) (vicX) [Streptococcus pyogenes strain NCTC12064]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1137316 DQM35_RS06815 WP_002985641.1 1328904..1329713(-) (vicX) [Streptococcus pyogenes strain NCTC12064]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment