Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BLGT_RS09600 Genome accession   NZ_CP006741
Coordinates   2293641..2295512 (-) Length   623 a.a.
NCBI ID   WP_011068647.1    Uniprot ID   Q8G7T3
Organism   Bifidobacterium longum subsp. longum GT15     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2283153..2308012 2293641..2295512 within 0


Gene organization within MGE regions


Location: 2283153..2308012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLGT_RS09555 (BLGT_09810) metG 2284084..2285949 (-) 1866 WP_011068654.1 methionine--tRNA ligase -
  BLGT_RS09565 (BLGT_09815) - 2286266..2286913 (+) 648 WP_007052934.1 hypothetical protein -
  BLGT_RS11320 (BLGT_09820) - 2286904..2287281 (+) 378 WP_007052935.1 hypothetical protein -
  BLGT_RS09575 (BLGT_09825) rsmI 2287308..2288318 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BLGT_RS09585 (BLGT_09835) - 2288898..2290316 (-) 1419 WP_011068650.1 MFS transporter -
  BLGT_RS09590 (BLGT_09840) - 2290398..2291444 (+) 1047 WP_007052939.1 FAD:protein FMN transferase -
  BLGT_RS09595 (BLGT_09845) rcrQ 2291596..2293425 (-) 1830 WP_038426584.1 ABC transporter ATP-binding protein Regulator
  BLGT_RS09600 (BLGT_09850) rcrP 2293641..2295512 (-) 1872 WP_011068647.1 ABC transporter ATP-binding protein Regulator
  BLGT_RS09605 (BLGT_09855) - 2295699..2296220 (-) 522 WP_007052942.1 MarR family winged helix-turn-helix transcriptional regulator -
  BLGT_RS09610 (BLGT_09860) - 2296582..2297145 (+) 564 WP_007055052.1 BRO family protein -
  BLGT_RS09615 (BLGT_09865) - 2297641..2300745 (-) 3105 WP_412141658.1 bacterial Ig-like domain-containing protein -
  BLGT_RS11375 - 2301050..2301115 (-) 66 WP_349816200.1 hypothetical protein -
  BLGT_RS09620 (BLGT_09870) - 2301689..2306230 (-) 4542 WP_038426586.1 exo-beta-1,6-galactobiohydrolase -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68056.50 Da        Isoelectric Point: 5.0180

>NTDB_id=113722 BLGT_RS09600 WP_011068647.1 2293641..2295512(-) (rcrP) [Bifidobacterium longum subsp. longum GT15]
MFRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKVMQTLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFRGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGEAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=113722 BLGT_RS09600 WP_011068647.1 2293641..2295512(-) (rcrP) [Bifidobacterium longum subsp. longum GT15]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGTGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCAGCCGAGATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGTTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCTATGGTCATGCCGAAGTTCAAGGTCATGCA
GACCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGAGACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGTTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCTTACCTCATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACTGAG
CCAATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAGGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCGAGGCCGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-543)

ABC transporter transmembrane region (ABC_membrane)

(54-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8G7T3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.657

100

0.494

Multiple sequence alignment