Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BLGT_RS09595 Genome accession   NZ_CP006741
Coordinates   2291596..2293425 (-) Length   609 a.a.
NCBI ID   WP_038426584.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. longum GT15     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2283153..2308012 2291596..2293425 within 0


Gene organization within MGE regions


Location: 2283153..2308012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLGT_RS09555 (BLGT_09810) metG 2284084..2285949 (-) 1866 WP_011068654.1 methionine--tRNA ligase -
  BLGT_RS09565 (BLGT_09815) - 2286266..2286913 (+) 648 WP_007052934.1 hypothetical protein -
  BLGT_RS11320 (BLGT_09820) - 2286904..2287281 (+) 378 WP_007052935.1 hypothetical protein -
  BLGT_RS09575 (BLGT_09825) rsmI 2287308..2288318 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BLGT_RS09585 (BLGT_09835) - 2288898..2290316 (-) 1419 WP_011068650.1 MFS transporter -
  BLGT_RS09590 (BLGT_09840) - 2290398..2291444 (+) 1047 WP_007052939.1 FAD:protein FMN transferase -
  BLGT_RS09595 (BLGT_09845) rcrQ 2291596..2293425 (-) 1830 WP_038426584.1 ABC transporter ATP-binding protein Regulator
  BLGT_RS09600 (BLGT_09850) rcrP 2293641..2295512 (-) 1872 WP_011068647.1 ABC transporter ATP-binding protein Regulator
  BLGT_RS09605 (BLGT_09855) - 2295699..2296220 (-) 522 WP_007052942.1 MarR family winged helix-turn-helix transcriptional regulator -
  BLGT_RS09610 (BLGT_09860) - 2296582..2297145 (+) 564 WP_007055052.1 BRO family protein -
  BLGT_RS09615 (BLGT_09865) - 2297641..2300745 (-) 3105 WP_412141658.1 bacterial Ig-like domain-containing protein -
  BLGT_RS11375 - 2301050..2301115 (-) 66 WP_349816200.1 hypothetical protein -
  BLGT_RS09620 (BLGT_09870) - 2301689..2306230 (-) 4542 WP_038426586.1 exo-beta-1,6-galactobiohydrolase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66650.98 Da        Isoelectric Point: 6.1438

>NTDB_id=113721 BLGT_RS09595 WP_038426584.1 2291596..2293425(-) (rcrQ) [Bifidobacterium longum subsp. longum GT15]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEAASIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESDKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIINDFSASVSAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTNKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=113721 BLGT_RS09595 WP_038426584.1 2291596..2293425(-) (rcrQ) [Bifidobacterium longum subsp. longum GT15]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGCTTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGTTTCCTTGAAGAGCC
GGAGATGGAGGACGAATCCGACAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCTTCAGTCTCGGCCGGTCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGATTTCCGGCGGTTCGAT
TTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGTGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGCCGTACGAGCTTTGTGATC
GCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGACGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(387-534)

ABC transporter transmembrane region (ABC_membrane)

(37-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.017

96.059

0.519

Multiple sequence alignment