Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL08_RS09110 Genome accession   NZ_LS483336
Coordinates   1776683..1777396 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12046     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1771683..1782396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL08_RS09100 (NCTC12046_01803) treC 1772753..1774381 (-) 1629 WP_023611290.1 alpha,alpha-phosphotrehalase -
  DQL08_RS09105 (NCTC12046_01804) treP 1774448..1776472 (-) 2025 WP_023611206.1 PTS system trehalose-specific EIIBC component -
  DQL08_RS09110 (NCTC12046_01805) treR 1776683..1777396 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  DQL08_RS09120 (NCTC12046_01806) - 1777675..1777994 (-) 320 Protein_1694 winged helix-turn-helix transcriptional regulator -
  DQL08_RS09125 (NCTC12046_01807) - 1778179..1779036 (+) 858 WP_023611201.1 VOC family protein -
  DQL08_RS09130 (NCTC12046_01808) yaaA 1779078..1779809 (+) 732 WP_023611232.1 peroxide stress protein YaaA -
  DQL08_RS09135 (NCTC12046_01809) nrdG 1779983..1780597 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQL08_RS09140 (NCTC12046_01810) - 1780597..1781106 (-) 510 WP_023611261.1 GNAT family N-acetyltransferase -
  DQL08_RS09145 (NCTC12046_01811) - 1781115..1782050 (-) 936 WP_023611243.1 Gfo/Idh/MocA family protein -
  DQL08_RS09735 (NCTC12046_01812) - 1782079..1782225 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=1137216 DQL08_RS09110 WP_002992823.1 1776683..1777396(+) (treR) [Streptococcus pyogenes strain NCTC12046]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1137216 DQL08_RS09110 WP_002992823.1 1776683..1777396(+) (treR) [Streptococcus pyogenes strain NCTC12046]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment