Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL30_RS08700 Genome accession   NZ_LS483333
Coordinates   1714508..1715221 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12048     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709508..1720221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS08690 (NCTC12048_01723) treC 1710578..1712206 (-) 1629 WP_111713998.1 alpha,alpha-phosphotrehalase -
  DQL30_RS08695 (NCTC12048_01724) treP 1712273..1714297 (-) 2025 WP_111713999.1 PTS system trehalose-specific EIIBC component -
  DQL30_RS08700 (NCTC12048_01725) treR 1714508..1715221 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  DQL30_RS08710 (NCTC12048_01726) - 1715500..1715838 (-) 339 Protein_1619 winged helix-turn-helix transcriptional regulator -
  DQL30_RS08715 (NCTC12048_01727) - 1716024..1716881 (+) 858 WP_009881025.1 VOC family protein -
  DQL30_RS08720 (NCTC12048_01728) yaaA 1716923..1717654 (+) 732 WP_012561068.1 peroxide stress protein YaaA -
  DQL30_RS08725 (NCTC12048_01729) nrdG 1717828..1718442 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQL30_RS08730 (NCTC12048_01730) - 1718442..1718951 (-) 510 WP_111714000.1 GNAT family N-acetyltransferase -
  DQL30_RS08735 (NCTC12048_01731) - 1718960..1719895 (-) 936 WP_111714001.1 Gfo/Idh/MocA family protein -
  DQL30_RS09170 (NCTC12048_01732) - 1719924..1720070 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=1137047 DQL30_RS08700 WP_002992823.1 1714508..1715221(+) (treR) [Streptococcus pyogenes strain NCTC12048]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1137047 DQL30_RS08700 WP_002992823.1 1714508..1715221(+) (treR) [Streptococcus pyogenes strain NCTC12048]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment