Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM36_RS09060 Genome accession   NZ_LS483332
Coordinates   1748044..1748757 (+) Length   237 a.a.
NCBI ID   WP_038432668.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12696     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743044..1753757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM36_RS09050 (NCTC12696_01783) treC 1744113..1745741 (-) 1629 WP_023610271.1 alpha,alpha-phosphotrehalase -
  DQM36_RS09055 (NCTC12696_01784) treP 1745809..1747833 (-) 2025 WP_038432665.1 PTS system trehalose-specific EIIBC component -
  DQM36_RS09060 (NCTC12696_01785) treR 1748044..1748757 (+) 714 WP_038432668.1 trehalose operon repressor Regulator
  DQM36_RS09070 (NCTC12696_01786) - 1749037..1749375 (-) 339 Protein_1685 winged helix-turn-helix transcriptional regulator -
  DQM36_RS09075 (NCTC12696_01787) - 1749561..1750418 (+) 858 WP_038432671.1 VOC family protein -
  DQM36_RS09080 (NCTC12696_01788) yaaA 1750460..1751191 (+) 732 WP_002982222.1 peroxide stress protein YaaA -
  DQM36_RS09085 (NCTC12696_01789) nrdG 1751365..1751979 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM36_RS09090 (NCTC12696_01790) - 1751979..1752488 (-) 510 WP_002991345.1 GNAT family N-acetyltransferase -
  DQM36_RS09095 (NCTC12696_01791) - 1752497..1753432 (-) 936 WP_002992828.1 Gfo/Idh/MocA family protein -
  DQM36_RS09670 (NCTC12696_01792) - 1753461..1753607 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27619.85 Da        Isoelectric Point: 9.8457

>NTDB_id=1136993 DQM36_RS09060 WP_038432668.1 1748044..1748757(+) (treR) [Streptococcus pyogenes strain NCTC12696]
MTKYERIYKDLETKINKDFYKEGDFLPTEIKLSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1136993 DQM36_RS09060 WP_038432668.1 1748044..1748757(+) (treR) [Streptococcus pyogenes strain NCTC12696]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAAAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTATCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.949

98.734

0.671

Multiple sequence alignment