Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM36_RS02380 Genome accession   NZ_LS483332
Coordinates   433358..434167 (+) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12696     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 428358..439167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM36_RS02360 (NCTC12696_00459) - 428800..430047 (+) 1248 WP_038432850.1 AMP-binding protein -
  DQM36_RS02365 (NCTC12696_00460) - 430103..431137 (+) 1035 WP_162472284.1 DUF3114 domain-containing protein -
  DQM36_RS02370 (NCTC12696_00461) vicR 431299..432009 (+) 711 WP_002985645.1 response regulator YycF Regulator
  DQM36_RS02375 (NCTC12696_00462) vicK 432002..433354 (+) 1353 WP_002995609.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM36_RS02380 (NCTC12696_00463) vicX 433358..434167 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQM36_RS02385 (NCTC12696_00464) rnc 434599..435291 (+) 693 WP_002985639.1 ribonuclease III -
  DQM36_RS02390 (NCTC12696_00465) smc 435292..438831 (+) 3540 WP_002990667.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=1136966 DQM36_RS02380 WP_002985641.1 433358..434167(+) (vicX) [Streptococcus pyogenes strain NCTC12696]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1136966 DQM36_RS02380 WP_002985641.1 433358..434167(+) (vicX) [Streptococcus pyogenes strain NCTC12696]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment