Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   DQL25_RS09530 Genome accession   NZ_LS483330
Coordinates   1863473..1864249 (+) Length   258 a.a.
NCBI ID   WP_063629376.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1858473..1869249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS09505 (NCTC8328_01889) - 1858792..1859895 (-) 1104 Protein_1779 IS30 family transposase -
  DQL25_RS09510 (NCTC8328_01890) - 1860053..1861075 (-) 1023 WP_172449985.1 IS30 family transposase -
  DQL25_RS09520 (NCTC8328_01892) rlmH 1861470..1861949 (-) 480 WP_002981964.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQL25_RS09525 (NCTC8328_01893) htrA 1862161..1863384 (+) 1224 WP_002991468.1 S1C family serine protease Regulator
  DQL25_RS09530 (NCTC8328_01894) spo0J 1863473..1864249 (+) 777 WP_063629376.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 258 a.a.        Molecular weight: 29041.86 Da        Isoelectric Point: 10.2588

>NTDB_id=1136881 DQL25_RS09530 WP_063629376.1 1863473..1864249(+) (spo0J) [Streptococcus pyogenes strain NCTC8328]
MTKELLIDLPIEDIITNPYQPRIQFNQRELQDLATSIKSNGLIQPIIVRKSDIFGYELVAGERRLKASKMAGLKKVPAII
KKISTLESMQQAIVENLQRSNLNAIEEAKAYQLLVEKKHMTHDEIAKYMGKSRPYISNTLRLLQLPAPIIKAIEEGKISA
GHARALLTLSDDKQQLYLTHKIQNEGLSVRQIEQLVTSTPSSKLSKKTKNIFATSLEKQLAKSLGLSVNMKLTANHSGYL
QISFSNDDELNRIINKLL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=1136881 DQL25_RS09530 WP_063629376.1 1863473..1864249(+) (spo0J) [Streptococcus pyogenes strain NCTC8328]
ATGACAAAAGAATTATTGATAGACTTACCAATTGAAGATATTATTACAAATCCCTATCAGCCAAGGATACAATTTAATCA
AAGAGAACTCCAAGACCTAGCAACTTCTATTAAATCAAACGGCCTCATTCAACCTATTATTGTTCGAAAATCTGACATTT
TTGGCTATGAGTTAGTTGCTGGAGAACGACGACTTAAAGCTTCAAAAATGGCTGGTCTAAAAAAAGTTCCAGCTATCATC
AAGAAGATCTCTACACTCGAGAGCATGCAACAAGCTATAGTTGAAAATTTACAACGTTCTAACCTTAACGCTATCGAAGA
AGCTAAAGCCTATCAGTTATTAGTTGAAAAAAAACACATGACTCACGATGAGATTGCTAAATATATGGGAAAATCAAGAC
CTTATATTAGCAATACCTTACGTCTGTTACAACTCCCAGCACCAATCATTAAAGCAATTGAAGAAGGAAAAATTAGTGCG
GGACACGCGCGTGCTCTTTTAACTTTGAGTGATGATAAGCAACAACTGTACCTCACTCATAAAATACAAAATGAAGGCCT
AAGTGTTAGGCAAATTGAGCAACTAGTTACTTCTACTCCAAGTTCGAAGCTATCTAAAAAAACTAAAAATATTTTTGCCA
CTTCTTTAGAGAAACAATTGGCTAAATCATTGGGACTCTCTGTCAATATGAAGCTGACAGCAAACCATAGTGGGTACCTT
CAGATATCTTTTTCCAATGATGATGAATTAAACAGAATTATCAACAAGCTACTTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

58.755

99.612

0.585


Multiple sequence alignment