Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   OB04_RS04350 Genome accession   NZ_CP009796
Coordinates   821796..822512 (+) Length   238 a.a.
NCBI ID   WP_038428609.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 816796..827512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS04335 (OB04_00855) yfkQ 816874..818415 (-) 1542 WP_038428608.1 spore germination protein -
  OB04_RS04340 (OB04_00856) treP 818604..820016 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  OB04_RS04345 (OB04_00857) treC 820087..821775 (+) 1689 WP_029317488.1 alpha,alpha-phosphotrehalase -
  OB04_RS04350 (OB04_00858) treR 821796..822512 (+) 717 WP_038428609.1 trehalose operon repressor Regulator
  OB04_RS04355 (OB04_00859) hypO 822652..823317 (+) 666 WP_029726870.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27813.76 Da        Isoelectric Point: 7.1736

>NTDB_id=113686 OB04_RS04350 WP_038428609.1 821796..822512(+) (treR) [Bacillus subtilis strain SG6]
MKANKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=113686 OB04_RS04350 WP_038428609.1 821796..822512(+) (treR) [Bacillus subtilis strain SG6]
ATGAAGGCGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.672

97.479

0.416