Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OB04_RS02800 Genome accession   NZ_CP009796
Coordinates   529169..529810 (+) Length   213 a.a.
NCBI ID   WP_038428413.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 524169..534810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS02770 (OB04_00539) ydfE 525364..525987 (-) 624 WP_003243530.1 flavin reductase family protein -
  OB04_RS02775 (OB04_00540) ydfF 526077..526757 (+) 681 WP_038428409.1 winged helix-turn-helix domain-containing protein -
  OB04_RS02780 (OB04_00541) ydfG 526837..527280 (-) 444 WP_038428410.1 carboxymuconolactone decarboxylase family protein -
  OB04_RS21265 (OB04_00542) - 527366..527545 (-) 180 WP_010886421.1 hypothetical protein -
  OB04_RS21270 - 527542..527685 (-) 144 WP_003243880.1 hypothetical protein -
  OB04_RS02795 (OB04_00543) ydfH 527953..529176 (+) 1224 WP_038428412.1 two-component system sensor histidine kinase YdfH -
  OB04_RS02800 (OB04_00544) vraR 529169..529810 (+) 642 WP_038428413.1 two-component system response regulator YdfI Regulator
  OB04_RS02805 (OB04_00545) pleJ 529926..532100 (+) 2175 WP_038428414.1 MMPL family transporter -
  OB04_RS02810 (OB04_00547) cesA 532514..533416 (-) 903 WP_038428415.1 carboxylesterase -
  OB04_RS02815 (OB04_00548) ydfK 533619..534308 (-) 690 WP_019712443.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23955.86 Da        Isoelectric Point: 5.3980

>NTDB_id=113683 OB04_RS02800 WP_038428413.1 529169..529810(+) (vraR) [Bacillus subtilis strain SG6]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEQHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLHEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=113683 OB04_RS02800 WP_038428413.1 529169..529810(+) (vraR) [Bacillus subtilis strain SG6]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAACAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTTAAACGTCTGCATG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACAGAAAAGGAAGTCATAGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371

Multiple sequence alignment