Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL47_RS02260 Genome accession   NZ_LS483328
Coordinates   450630..451355 (+) Length   241 a.a.
NCBI ID   WP_111689884.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 445630..456355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS02230 (NCTC12090_00445) tsaE 446102..446545 (+) 444 WP_037580090.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL47_RS02235 (NCTC12090_00446) - 446538..447065 (+) 528 WP_014622377.1 GNAT family N-acetyltransferase -
  DQL47_RS02240 (NCTC12090_00447) brpA 447066..448328 (+) 1263 WP_111689880.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL47_RS02245 (NCTC12090_00448) - 448492..448794 (-) 303 WP_111689881.1 chemotaxis protein -
  DQL47_RS02250 (NCTC12090_00449) - 448791..449210 (-) 420 WP_111689882.1 HIT family protein -
  DQL47_RS02255 (NCTC12090_00450) - 449662..450093 (-) 432 WP_111689883.1 hypothetical protein -
  DQL47_RS02260 (NCTC12090_00451) pptA 450630..451355 (+) 726 WP_111689884.1 ABC transporter ATP-binding protein Regulator
  DQL47_RS02265 (NCTC12090_00452) - 451359..452393 (+) 1035 WP_021320422.1 ABC transporter permease -
  DQL47_RS02270 (NCTC12090_00453) ccrZ 452456..453247 (+) 792 WP_012515084.1 cell cycle regulator CcrZ -
  DQL47_RS02275 (NCTC12090_00454) trmB 453247..453882 (+) 636 WP_111689885.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL47_RS02290 (NCTC12090_00456) rimP 455274..455756 (+) 483 WP_042670147.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26506.76 Da        Isoelectric Point: 4.7547

>NTDB_id=1136730 DQL47_RS02260 WP_111689884.1 450630..451355(+) (pptA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYNGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDLELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1136730 DQL47_RS02260 WP_111689884.1 450630..451355(+) (pptA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTTGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCTT
ATAACGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCTTATATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTATGATATTGATTTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGTTTGACGGATAAGCTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGTTTTGTGATATTGCATCAGGGGCAGGTGCGTGCGCAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACCTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.059

99.17

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

99.17

0.726

Multiple sequence alignment