Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQL47_RS01245 Genome accession   NZ_LS483328
Coordinates   239369..240730 (+) Length   453 a.a.
NCBI ID   WP_038674595.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 234369..245730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS01230 (NCTC12090_00249) - 235930..237726 (+) 1797 WP_111689800.1 ABC transporter ATP-binding protein -
  DQL47_RS01235 (NCTC12090_00250) - 237888..238655 (+) 768 WP_111689801.1 epoxyqueuosine reductase QueH -
  DQL47_RS01240 (NCTC12090_00251) - 238856..239302 (+) 447 WP_014622233.1 dUTP diphosphatase -
  DQL47_RS01245 (NCTC12090_00252) radA 239369..240730 (+) 1362 WP_038674595.1 DNA repair protein RadA Machinery gene
  DQL47_RS10210 - 240881..241045 (-) 165 WP_154224863.1 hypothetical protein -
  DQL47_RS01255 (NCTC12090_00253) - 241552..242058 (+) 507 WP_111689802.1 beta-class carbonic anhydrase -
  DQL47_RS01260 (NCTC12090_00254) - 242186..242899 (+) 714 WP_042671341.1 TIGR00266 family protein -
  DQL47_RS01265 (NCTC12090_00255) - 243385..244782 (-) 1398 WP_111689803.1 ISNCY family transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49375.85 Da        Isoelectric Point: 6.7545

>NTDB_id=1136725 DQL47_RS01245 WP_038674595.1 239369..240730(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MAKKKVRFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHINGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDIPSGIEVVGVMTVGEVLKAVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1136725 DQL47_RS01245 WP_038674595.1 239369..240730(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATAGCTAAGAAAAAGGTGAGGTTTATCTGTGGAGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCCTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATATCAATGGCGTTCGCTACCAGCGTATCCAGACAGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGCGGTGTTGTGCCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGTTTGGGACAGACCGACAATGATTTTTACCTCTATGCAGAGACCAATATGCAGGCTATTCGGGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGCTCGGT
CAGTCAGGTTCGAGAGGTCACTGCTGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCGCATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGTGAGAGG
CATCATACCTTTCGTATCTTGCGAGCTGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGCTTAGTGGAGGTTCTCAACCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGCTCTGCTGTGG
TTGTCACCATGGAGGGGAGCAGACCGATTTTAGCTGAGGTGCAGGCTTTGGTGACACCGACTGTTTTTGGTAATGCTAGA
CGAACGACAACTGGGTTGGACTTTAATCGTGTTAGCCTGATTATGGCTGTCCTAGAAAAGCGCTGCGGCCTGCTGCTACA
AAATCAAGATGCCTACCTCAAATCAGCAGGAGGTGTGAAGCTAGATGAGCCTGCTATTGATTTGGCAGTTGCTGTGGCTA
TTGCTTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTCTTAGGAGAGATTGGCTTGACGGGCGAGATTCGG
CGGGTCACTCGTATTGAGCAGCGGATCAATGAGGCTGCAAAGCTTGGCTTTACCAAGCTTTACGCTCCTAAAAGCTCATT
GCAGGGCATTGACATACCAAGTGGGATTGAGGTTGTTGGTGTAATGACAGTAGGAGAGGTCTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

83.885

100

0.839
  radA Streptococcus pneumoniae D39

83.885

100

0.839
  radA Streptococcus pneumoniae R6

83.885

100

0.839
  radA Streptococcus pneumoniae TIGR4

83.885

100

0.839
  radA Streptococcus mitis SK321

83.885

100

0.839
  radA Streptococcus mitis NCTC 12261

83.664

100

0.837
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment