Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQL59_RS06890 Genome accession   NZ_LS483326
Coordinates   1352331..1353692 (-) Length   453 a.a.
NCBI ID   WP_111681294.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1347331..1358692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL59_RS06865 (NCTC12045_01359) - 1347436..1348782 (-) 1347 WP_111681292.1 sensor histidine kinase -
  DQL59_RS06870 (NCTC12045_01360) gltX 1349177..1350622 (-) 1446 WP_111681293.1 glutamate--tRNA ligase -
  DQL59_RS06880 (NCTC12045_01361) - 1350804..1351514 (-) 711 WP_172449701.1 TIGR00266 family protein -
  DQL59_RS06885 (NCTC12045_01362) - 1351645..1352142 (-) 498 WP_011017310.1 beta-class carbonic anhydrase -
  DQL59_RS06890 (NCTC12045_01363) radA 1352331..1353692 (-) 1362 WP_111681294.1 DNA repair protein RadA Machinery gene
  DQL59_RS06895 (NCTC12045_01364) - 1353773..1354219 (-) 447 WP_111681295.1 dUTP diphosphatase -
  DQL59_RS06900 (NCTC12045_01365) - 1354329..1355096 (-) 768 WP_002986113.1 epoxyqueuosine reductase QueH -
  DQL59_RS06905 (NCTC12045_01366) - 1355214..1356998 (-) 1785 WP_111681296.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49401.67 Da        Isoelectric Point: 5.8692

>NTDB_id=1136641 DQL59_RS06890 WP_111681294.1 1352331..1353692(-) (radA) [Streptococcus pyogenes strain NCTC12045]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIISPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
RHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1136641 DQL59_RS06890 WP_111681294.1 1352331..1353692(-) (radA) [Streptococcus pyogenes strain NCTC12045]
ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAGTATTTAGGGCGCTGTCCAAATTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT
CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTGACATGTCTGAATTTAATAGAGTT
CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCGGGTATTGGAAAATCCACCTTACTCTTGCA
GGTATCCACGCAGCTCGCTAATAAGGGAACGGTTCTCTATGTGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTCTTGATTATTGATTCTATCCAAACCATTATAAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGAACCTTAGCTGGTCCCCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CGTCATACTTTTCGCATCTTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTTGTTGAGGTCTTAAACCCAAGCCAAGTTTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTAACCCCAACCGTTTTTGGTAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATCATGGCAGTCTTAGAAAAGCGTTGTGGTTTACTCTTACA
AAATCAAGATGCCTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA
TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGATTTACTAAGGTCTATGCTCCTAAAAATGCCTT
GCAAGGCATTGATATCCCTCAAGGTATTGAGGTTGTTGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(56-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

85.21

100

0.852
  radA Streptococcus pneumoniae Rx1

84.989

100

0.85
  radA Streptococcus pneumoniae D39

84.989

100

0.85
  radA Streptococcus pneumoniae R6

84.989

100

0.85
  radA Streptococcus pneumoniae TIGR4

84.989

100

0.85
  radA Streptococcus mitis SK321

84.989

100

0.85
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

100

0.616

Multiple sequence alignment