Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQL35_RS03220 Genome accession   NZ_LS483325
Coordinates   658003..659805 (+) Length   600 a.a.
NCBI ID   WP_111677878.1    Uniprot ID   A0AAX2LIV7
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 653003..664805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS03200 (NCTC7022_00640) queA 654056..655084 (-) 1029 WP_043025510.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DQL35_RS03205 (NCTC7022_00641) nagB 655352..656056 (+) 705 WP_012515299.1 glucosamine-6-phosphate deaminase -
  DQL35_RS03210 (NCTC7022_00642) - 656228..656944 (+) 717 WP_043025514.1 pseudouridine synthase -
  DQL35_RS03215 (NCTC7022_00643) - 657036..658013 (+) 978 WP_111677877.1 competence protein CoiA -
  DQL35_RS03220 (NCTC7022_00644) pepF 658003..659805 (+) 1803 WP_111677878.1 oligoendopeptidase F Regulator
  DQL35_RS03225 (NCTC7022_00645) - 660005..660562 (+) 558 WP_111677879.1 GNAT family N-acetyltransferase -
  DQL35_RS03230 (NCTC7022_00646) - 660552..661184 (+) 633 WP_012515304.1 HAD-IA family hydrolase -
  DQL35_RS03235 (NCTC7022_00647) - 661235..661873 (+) 639 WP_038674841.1 HAD family hydrolase -
  DQL35_RS03240 (NCTC7022_00648) - 661956..662663 (+) 708 WP_111677880.1 O-methyltransferase -
  DQL35_RS03245 (NCTC7022_00649) prsA 662726..663727 (+) 1002 WP_012515307.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69064.95 Da        Isoelectric Point: 4.7152

>NTDB_id=1136567 DQL35_RS03220 WP_111677878.1 658003..659805(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMALSQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRKVRRAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLHEVQDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNKLYADLNEKYYGLKKKDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1136567 DQL35_RS03220 WP_111677878.1 658003..659805(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTATACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
GACAGAAGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGCAGCAGTC
TCTTAGATATCACAGAGCTGCAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCCAAGTATCAGGAATATCAGGCAAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTTTC
TTTTTATGAGCCAGAGTTTATGGCCTTGAGTCAAGAGACCTATCAGGCCTTCTTAGCGGAGAAGCCAGAATTAGCAGTCT
ATGATCATTTCTTTGATAAATTGTTCAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTCGATAATGCCGATATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCTTGATGGAATCTAAAGACCGCAAGGTGCGTAGGGCAG
CTTATGAGGCGATGTACAGCACCTATGAGCAATTCCAGCATACCTACGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATCCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTGCCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGTT
TAGATGATCTAAAGATGTATGATGTTTATACTCCTTTATCTGAGACAGATCTTGCTATCGGCTATGATGAGGCCTTGGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGCCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAGGACACGCTTGATAACCTCTATACGCTAGTGCATGAGACAGGCCATAGCCTGCACTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCTTAGCTGAGATTGCTTCAACCACTAATGAAAATATCATGACTGAGGC
CTTGTTACATGAGGTGCAGGATGATAAGGAGCGCTTTGCTATTTTGAATCATTACCTAGATGGTTTTCGTGGAACGGTTT
TTCGTCAAACACAGTTTGCTGAGTTTGAGCATGCTATTCATCAGGCGGATCAAAATGGTGAGGTGTTAACAAGTGAATAC
CTCAATAAGCTATATGCTGATTTAAATGAAAAGTATTATGGATTAAAGAAAAAGGACAACCACTTTATCCAGTATGAGTG
GGCTCGTATCCCACACTTCTATTACAACTACTATGTCTATCAATATGCAACAGGCTTTGCTGCAGCCAGCTACTTGGCTG
ATAAGATTGTGCATGGTACTCAAGAGGATATTGATCACTATTTGACTTATCTGAAGTCTGGAAATTCAGATTATCCTCTT
GAGGTGATTGCCAAGGCTGGTGTTGATATGGCTAAGGGGGATTACCTAGAAGCAGCCTTTAAGGTCTTTGAAGAGCGCTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCACATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73

100

0.73

Multiple sequence alignment