Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   DQL35_RS00830 Genome accession   NZ_LS483325
Coordinates   147051..149492 (+) Length   813 a.a.
NCBI ID   WP_111677661.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 142051..154492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS00800 (NCTC7022_00160) ahpF 142391..143923 (-) 1533 WP_111677659.1 alkyl hydroperoxide reductase subunit F -
  DQL35_RS00805 (NCTC7022_00161) ahpC 143944..144504 (-) 561 WP_012514798.1 alkyl hydroperoxide reductase subunit C -
  DQL35_RS00815 (NCTC7022_00163) - 145129..145836 (+) 708 WP_111677660.1 exotoxin beta-grasp domain-containing protein -
  DQL35_RS00820 (NCTC7022_00164) - 146215..146418 (+) 204 WP_012514799.1 cold-shock protein -
  DQL35_RS00825 (NCTC7022_00165) - 146590..147051 (+) 462 WP_012677252.1 CtsR family transcriptional regulator -
  DQL35_RS00830 (NCTC7022_00166) clpC 147051..149492 (+) 2442 WP_111677661.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  DQL35_RS10970 - 149840..149985 (-) 146 Protein_128 putative holin-like toxin -
  DQL35_RS00840 (NCTC7022_00169) - 150266..150700 (+) 435 WP_111677663.1 hypothetical protein -
  DQL35_RS00845 (NCTC7022_00171) - 150822..151262 (+) 441 WP_111677664.1 hypothetical protein -
  DQL35_RS00850 (NCTC7022_00173) - 151481..151894 (+) 414 WP_042669846.1 hypothetical protein -
  DQL35_RS00855 (NCTC7022_00174) - 151897..153210 (+) 1314 WP_111677665.1 hypothetical protein -
  DQL35_RS00860 (NCTC7022_00175) - 153192..153584 (+) 393 WP_043052249.1 hypothetical protein -
  DQL35_RS00865 (NCTC7022_00176) - 153565..153855 (+) 291 WP_111677666.1 hypothetical protein -
  DQL35_RS00870 (NCTC7022_00177) groES 154154..154441 (+) 288 WP_037580584.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 813 a.a.        Molecular weight: 90491.38 Da        Isoelectric Point: 6.4367

>NTDB_id=1136556 DQL35_RS00830 WP_111677661.1 147051..149492(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MMIYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVEDAYQILLGLKPSYEQYHNVTISDT
AVHTAVKLARRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMNKVSALLAKEDKQPKLKPTAVTE
DDMLHTLSRLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQTMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQILK
IGVSRGKLAFDIA

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=1136556 DQL35_RS00830 WP_111677661.1 147051..149492(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
GTGATGATTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAAGCAGAGCGCTTTGATAGTCCTTACCT
TGAGACCTGGCATATTTTATTAGCTATGGTAGCTGTTGACCATTCCTTAGCGGCCATGGTGTTAAGCGAATTTGAACGAA
AGATTAGGGCTGAAGAGTATGAGGCTGCTGCTATTTTAGCCATGGGAAAAAGTCCCAAAGAGGTGACTTCTGTCCAATTC
AAGCCACAATCCAAGGCCTTATCAGAAATACTAGCATTTGCTCATGCTATCTGTCAGGTTACCAATGAGCATGAGGTTGG
CTCAGAGCATGTACTCTTTGCTATTTTGCTCAATCCGGATATTATGGCCAGTCGTCTGTTAGAATTGGCAGGCTACAGGC
TCAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGCAAGGAA
ACTATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCCATTCCTTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGTAAGATCATTTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACTCTTGATGCAGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCATATTGAAAAGGACGCAGCCCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTTGAGGACGCTTATCAGATTTTGCTTGGCTTGAAGCCTTCCTATGAACAGTACCATAATGTAACAATCTCTGATACA
GCTGTCCATACAGCTGTGAAGCTGGCTCGGCGCTATTTGACAAGTAAGCAGCTTCCAGACTCAGCGATTGATCTGCTTGA
TGAAGCCAGTGCGATGGTGCAAAGTATGGTTAAAAAGACGCAGCCTGACTTTATAACGCCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGAACAAGGTGTCAGCCCTTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTCACTGAA
GATGATATGTTACACACCTTAAGCAGGCTATCAGGTATTCCACTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
AAATTTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ATCAGTCAGGCATTCGCACAGGCAGACGCCCGATTGGCTCCTTTATGTTTCTTGGTCCAACCGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGACATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCTCGTCTCAATGGTGCTCCTCCTGGCTATGTTGGCTATGATGAAGGAGGCGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTCGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAACAATGGAAA
AGCGTATTTTGGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAGAAGGTGGTCTTCCATAGC
CTAACACAGGAAAACATGCGTGATGTGGTGAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTATCTGAAGCTGGTTACGATGTTGAAATGGGCGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGTGGTCAAATCCTCAAG
ATTGGTGTATCACGTGGGAAGCTAGCTTTTGATATCGCTTGA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(374-459)

ATPase family associated with various cellular activities (AAA) (AAA)

(235-367)

AAA domain (Cdc48 subfamily) (AAA_2)

(543-714)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(721-800)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(95-131)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(15-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

74.662

100

0.747
  clpC Streptococcus thermophilus LMD-9

72.304

100

0.726
  clpC Streptococcus thermophilus LMG 18311

72.059

100

0.723
  clpC Streptococcus pneumoniae Rx1

66.093

100

0.662
  clpC Streptococcus pneumoniae D39

66.093

100

0.662
  clpC Streptococcus pneumoniae TIGR4

65.848

100

0.659
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.623

100

0.499
  clpC Bacillus subtilis subsp. subtilis str. 168

43.832

100

0.45

Multiple sequence alignment