Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL05_RS08295 Genome accession   NZ_LS483322
Coordinates   1644932..1645645 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12066     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639932..1650645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL05_RS08285 (NCTC12066_01638) treC 1641001..1642629 (-) 1629 WP_021733072.1 alpha,alpha-phosphotrehalase -
  DQL05_RS08290 (NCTC12066_01639) treP 1642697..1644721 (-) 2025 WP_023080297.1 PTS system trehalose-specific EIIBC component -
  DQL05_RS08295 (NCTC12066_01640) treR 1644932..1645645 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  DQL05_RS08305 (NCTC12066_01641) - 1645925..1646263 (-) 339 Protein_1536 winged helix-turn-helix transcriptional regulator -
  DQL05_RS08310 (NCTC12066_01642) - 1646449..1647306 (+) 858 WP_023605347.1 VOC family protein -
  DQL05_RS08315 (NCTC12066_01643) yaaA 1647348..1648079 (+) 732 WP_002982222.1 peroxide stress protein YaaA -
  DQL05_RS08320 (NCTC12066_01644) nrdG 1648253..1648867 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQL05_RS08325 (NCTC12066_01645) - 1648867..1649376 (-) 510 WP_002991345.1 GNAT family N-acetyltransferase -
  DQL05_RS08330 (NCTC12066_01646) - 1649385..1650320 (-) 936 WP_009880789.1 Gfo/Idh/MocA family protein -
  DQL05_RS08915 (NCTC12066_01647) - 1650349..1650495 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=1136444 DQL05_RS08295 WP_002992823.1 1644932..1645645(+) (treR) [Streptococcus pyogenes strain NCTC12066]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1136444 DQL05_RS08295 WP_002992823.1 1644932..1645645(+) (treR) [Streptococcus pyogenes strain NCTC12066]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment