Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B689B_RS09445 Genome accession   NZ_CP006715
Coordinates   2221541..2223409 (-) Length   622 a.a.
NCBI ID   WP_025332523.1    Uniprot ID   -
Organism   Bifidobacterium breve 689b     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2216541..2228409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B689B_RS09430 (B689b_1864) - 2217107..2218525 (-) 1419 WP_025332520.1 MFS transporter -
  B689B_RS09435 (B689b_1865) - 2218630..2219571 (+) 942 WP_025332521.1 FAD:protein FMN transferase -
  B689B_RS09440 (B689b_1866) rcrQ 2219580..2221409 (-) 1830 WP_025332522.1 ABC transporter ATP-binding protein Regulator
  B689B_RS09445 (B689b_1867) rcrP 2221541..2223409 (-) 1869 WP_025332523.1 ABC transporter ATP-binding protein Regulator
  B689B_RS09450 (B689b_1868) - 2223593..2224114 (-) 522 WP_016462706.1 MarR family winged helix-turn-helix transcriptional regulator -
  B689B_RS10515 - 2224740..2224964 (+) 225 WP_230577554.1 DUF1684 domain-containing protein -
  B689B_RS09455 (B689b_1869) - 2225052..2226575 (-) 1524 WP_025332524.1 amino acid permease -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68099.70 Da        Isoelectric Point: 5.1129

>NTDB_id=113638 B689B_RS09445 WP_025332523.1 2221541..2223409(-) (rcrP) [Bifidobacterium breve 689b]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFKNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTSAGRKREALQLATDAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAE
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHKELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=113638 B689B_RS09445 WP_025332523.1 2221541..2223409(-) (rcrP) [Bifidobacterium breve 689b]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACGCCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAGATGCTGCTGGTCTCGCTCGGCTCGGTCTGCTGCGCCATCATCACCGGTTACATCGCGGCA
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTGCGCTCGCTCGAATTCCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATTCTGCTGGTCGCTGTCGTAATCCTCATGGCACTGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCCAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCGCGCGCCGACGTGTCCGCACAGCGCGTGATGGAAGTGTTGAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGACATCGCAAAGACCGGGCAGACCGGCACCGTGGAATTCAAGAACGT
GAGCTTCACCTACCCGGATTCGCGCGAGGCTATGCTGCAGGATATCAATTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTATCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTATGTACCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAACATCAGCTACGGCGACAAGCCCGGAGAGAACGACGCGGTCGAACTGGCGGATA
CTTCCACTTCCGCCGGCCGCAAGCGCGAGGCGCTTCAGCTGGCCACCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAACAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCTGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCGAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGTACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTTGTGGGGCAAGGCACACACAAGGAGTTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-292)

ABC transporter (ABC_tran)

(359-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.576

100

0.494

Multiple sequence alignment