Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B689B_RS09440 Genome accession   NZ_CP006715
Coordinates   2219580..2221409 (-) Length   609 a.a.
NCBI ID   WP_025332522.1    Uniprot ID   -
Organism   Bifidobacterium breve 689b     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214580..2226409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B689B_RS10510 - 2214961..2215308 (+) 348 WP_015439310.1 hypothetical protein -
  B689B_RS09420 (B689b_1863) rsmI 2215428..2216447 (-) 1020 WP_003832378.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B689B_RS09430 (B689b_1864) - 2217107..2218525 (-) 1419 WP_025332520.1 MFS transporter -
  B689B_RS09435 (B689b_1865) - 2218630..2219571 (+) 942 WP_025332521.1 FAD:protein FMN transferase -
  B689B_RS09440 (B689b_1866) rcrQ 2219580..2221409 (-) 1830 WP_025332522.1 ABC transporter ATP-binding protein Regulator
  B689B_RS09445 (B689b_1867) rcrP 2221541..2223409 (-) 1869 WP_025332523.1 ABC transporter ATP-binding protein Regulator
  B689B_RS09450 (B689b_1868) - 2223593..2224114 (-) 522 WP_016462706.1 MarR family winged helix-turn-helix transcriptional regulator -
  B689B_RS10515 - 2224740..2224964 (+) 225 WP_230577554.1 DUF1684 domain-containing protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66653.01 Da        Isoelectric Point: 5.7905

>NTDB_id=113637 B689B_RS09440 WP_025332522.1 2219580..2221409(-) (rcrQ) [Bifidobacterium breve 689b]
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRVTNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKVSQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISAC
KAVGLHHYIMSLPNGYDTVLEENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALSD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=113637 B689B_RS09440 WP_025332522.1 2219580..2221409(-) (rcrQ) [Bifidobacterium breve 689b]
ATGCCAAGAGGACCTATGGGCCGCGGAGGTGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAACTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATCATCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCATGGCAAGCCGGTGCTCAATTCC
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
GAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCGCAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGTTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCTCGCGTCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACAACAACTG
GATCATGGCGCTGTGCGCAATCGGTTCAAGCATCATCGGCCTGATCATCATGATGGTCATTATGAAGGTCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAGGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCGGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAATTCGGCGTGATTGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTC
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGTC
GGAAATGGCTGACGAATCCGGCAAGCAGGCGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ACGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTGCTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGATGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATCTTTAATGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCAGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGAGGAGAATTCGTCGCTGTC
CGCCGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTACAGGACGCACCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTCGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATT
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCACGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGTTGCTGGCTGCTGGTGGCTTCTACGCGGATTTGTACAACAGCCAGTTCGCTTTGTCGGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(387-534)

ABC transporter transmembrane region (ABC_membrane)

(37-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.675

96.059

0.516

Multiple sequence alignment