Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM44_RS09945 Genome accession   NZ_LS483318
Coordinates   1988372..1989085 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1983372..1994085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS09935 (NCTC5370_02036) treC 1984442..1986070 (-) 1629 WP_022555233.1 alpha,alpha-phosphotrehalase -
  DQM44_RS09940 (NCTC5370_02037) treP 1986137..1988161 (-) 2025 WP_111711702.1 PTS system trehalose-specific EIIBC component -
  DQM44_RS09945 (NCTC5370_02038) treR 1988372..1989085 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  DQM44_RS09955 (NCTC5370_02039) - 1989367..1989705 (-) 339 WP_022555235.1 helix-turn-helix domain-containing protein -
  DQM44_RS09960 (NCTC5370_02040) - 1989891..1990747 (+) 857 Protein_1887 VOC family protein -
  DQM44_RS09965 (NCTC5370_02041) yaaA 1990789..1991520 (+) 732 WP_022555238.1 peroxide stress protein YaaA -
  DQM44_RS09970 (NCTC5370_02042) nrdG 1991693..1992307 (-) 615 WP_003058750.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM44_RS09975 (NCTC5370_02043) - 1992311..1992814 (-) 504 WP_022555241.1 GNAT family N-acetyltransferase -
  DQM44_RS09980 (NCTC5370_02044) - 1992823..1993758 (-) 936 WP_012767638.1 Gfo/Idh/MocA family oxidoreductase -
  DQM44_RS10515 (NCTC5370_02045) - 1993787..1993933 (-) 147 WP_003053094.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1136230 DQM44_RS09945 WP_002982243.1 1988372..1989085(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1136230 DQM44_RS09945 WP_002982243.1 1988372..1989085(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACTAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGCTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTCGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGACGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment