Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM44_RS08470 Genome accession   NZ_LS483318
Coordinates   1673087..1673812 (-) Length   241 a.a.
NCBI ID   WP_022555084.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668087..1678812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS08440 (NCTC5370_01733) nusA 1668282..1669439 (-) 1158 WP_041789227.1 transcription termination factor NusA -
  DQM44_RS08445 (NCTC5370_01734) rimP 1669582..1670076 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  DQM44_RS08455 (NCTC5370_01736) trmB 1670559..1671194 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM44_RS08460 (NCTC5370_01737) - 1671194..1671985 (-) 792 WP_003052472.1 phosphotransferase family protein -
  DQM44_RS08465 (NCTC5370_01738) - 1672050..1673084 (-) 1035 WP_022555083.1 ABC transporter permease -
  DQM44_RS08470 (NCTC5370_01739) pptA 1673087..1673812 (-) 726 WP_022555084.1 ABC transporter ATP-binding protein Regulator
  DQM44_RS08475 (NCTC5370_01740) - 1673884..1674303 (+) 420 WP_003057067.1 HIT family protein -
  DQM44_RS08480 (NCTC5370_01741) - 1674300..1674629 (+) 330 WP_003057072.1 hypothetical protein -
  DQM44_RS08485 (NCTC5370_01742) - 1674787..1676055 (-) 1269 WP_042357980.1 LCP family protein -
  DQM44_RS10775 - 1676067..1676589 (-) 523 Protein_1598 GNAT family N-acetyltransferase -
  DQM44_RS08495 (NCTC5370_01745) tsaE 1676582..1677025 (-) 444 WP_041789229.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM44_RS08500 - 1677202..1678662 (-) 1461 Protein_1600 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26386.62 Da        Isoelectric Point: 4.6450

>NTDB_id=1136222 DQM44_RS08470 WP_022555084.1 1673087..1673812(-) (pptA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MLNIENLTGGYLNIPVLKEVSFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYQGEISIDGLTLAADPAAYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAQKRAEPFLKMFRLADKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLELEKGKGKSILMSTHVLDSAEKMCDRFVILHHGQVRAQGTLADLQDAFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1136222 DQM44_RS08470 WP_022555084.1 1673087..1673812(-) (pptA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGTTAAACATTGAAAATCTAACGGGGGGTTACCTCAATATTCCCGTTTTAAAAGAGGTCTCATTTTCTGTTGGCAATGG
TGAATTAGTTGGGTTGATAGGCTTAAATGGAGCTGGAAAATCAACAACTATCAATGAAATTATTGGTTTTTTAAAACCTT
ATCAGGGAGAAATCTCGATTGATGGACTAACCTTGGCTGCAGATCCAGCTGCCTATCGTAAGAAAATTGGATTTATCCCA
GAGACACCTAGCCTCTATGAAGAATTAACTTTGGCAGAGCATATTAATACTGTGGCTATGGCCTATGATATTGATGTGGA
ATTGGCACAAAAACGAGCAGAACCGTTTTTAAAGATGTTCCGCTTAGCTGATAAATTAGATTGGTTTCCTGTTCATTTTT
CAAAAGGCATGAAGCAAAAAGTCATGATTATCTGTGCTTTTGTGATTGATCCAAGTCTGTTTATCCTTGACGAGCCATTT
TTAGGATTAGACCCGTTGGCTATCTCAGACTTGATTCAGACTTTGGAGCTTGAAAAAGGCAAAGGCAAATCGATTTTAAT
GAGTACTCATGTGCTTGACTCTGCTGAGAAAATGTGTGATCGTTTTGTCATTCTGCATCATGGTCAAGTACGGGCTCAGG
GAACGCTTGCTGACTTGCAGGATGCCTTCGGTGATGCTTCTGCTAGCCTTAACGATATTTACCTGGCATTGACAAAAGAG
GGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

99.17

0.747
  pptA Streptococcus thermophilus LMD-9

74.477

99.17

0.739

Multiple sequence alignment