Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM44_RS06820 Genome accession   NZ_LS483318
Coordinates   1325939..1327741 (-) Length   600 a.a.
NCBI ID   WP_003060489.1    Uniprot ID   A0A9X8XH27
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320939..1332741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS06795 (NCTC5370_01404) - 1321600..1322313 (-) 714 WP_003061033.1 O-methyltransferase -
  DQM44_RS06800 (NCTC5370_01405) - 1322365..1323576 (-) 1212 WP_003060125.1 OFA family MFS transporter -
  DQM44_RS06805 (NCTC5370_01406) - 1323910..1324533 (-) 624 WP_003055586.1 HAD-IA family hydrolase -
  DQM44_RS06810 (NCTC5370_01407) - 1324533..1325075 (-) 543 WP_022554923.1 GNAT family N-acetyltransferase -
  DQM44_RS06815 (NCTC5370_01408) - 1325205..1325753 (-) 549 WP_044565454.1 NADPH-dependent FMN reductase -
  DQM44_RS06820 (NCTC5370_01409) pepF 1325939..1327741 (-) 1803 WP_003060489.1 oligoendopeptidase F Regulator
  DQM44_RS06825 (NCTC5370_01410) - 1327752..1328714 (-) 963 WP_044565456.1 competence protein CoiA family protein -
  DQM44_RS06830 (NCTC5370_01411) - 1328826..1329986 (-) 1161 WP_046177844.1 MFS transporter -
  DQM44_RS06835 (NCTC5370_01413) - 1330078..1330794 (-) 717 Protein_1292 pseudouridine synthase -
  DQM44_RS06840 (NCTC5370_01414) nagB 1330898..1331611 (-) 714 WP_003056370.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69149.88 Da        Isoelectric Point: 4.6804

>NTDB_id=1136207 DQM44_RS06820 WP_003060489.1 1325939..1327741(-) (pepF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MTDNRSHLEEKYTWDLSTIFATDKDWEAEVSGLASEIDAAKDFSGHLLDSSANLLTITDTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMALSQEDYQAFLAETPDLKRYHHFFDKLFQTRDHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPVVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQDVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYADLNEKYYGLSKDDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEALVAKGVHH

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1136207 DQM44_RS06820 WP_003060489.1 1325939..1327741(-) (pepF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGACAGATAATCGTAGTCATTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACAGATAAGGATTGGGA
AGCTGAAGTCAGTGGCTTAGCTAGTGAAATTGACGCGGCTAAGGATTTTTCAGGTCATTTACTAGATTCTAGCGCTAATC
TGTTGACAATTACAGATACTTATTTAGAGTTAGCTCGTCGTGTTGAGAAAGTCTATGTCTATGCTCATATGAAAAATGAT
CAAGACACGACTGTTGCTAAATATCAAGAATATCAGGCTAAGGCTTCTGGCTTGTATGCTAAATTTAGCGAAGTGTTTTC
ATTCTATGACCCAGAAGTTATGGCATTGAGTCAGGAAGATTACCAAGCTTTTCTTGCGGAAACTCCTGATTTAAAAAGGT
ATCATCATTTCTTTGACAAATTGTTCCAGACACGTGACCATGTGCTTAGCCAGGCTGAAGAGGAATTATTAGCAGGAGCC
CAAGAAATTTTCAATGGCGCTGAAGAAACCTTTAGCATTCTGGATAACGCTGATATTGTCTTTCCAGTAGTTAAAAATGA
TAAGGGGGAAGATGTTGAATTAACCCATGGTAACTTCATCAGTTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTACGAGGCAATGTATAGCACTTATGAACAGTTTCAACACACTTATGCTAAAACCTTACAAACAAATGTTAAGGTTCAA
AATTACAAGGCGCGTGTTCATAAATACGATTCAGCACGTCAAGCTGCCATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
CGACACTTTATTAGAAACGGTTAACAAACATTTACCACTTTTACACCGTTACTTGAAACTTCGCCAAGATGTTCTTGGTC
TAGATGAGTTGAAGATGTATGATGTTTACACACCATTATCTGAAACAGACCTAGCCATTGGTTATGATGAGGCTTTGGAA
AAAGCTGAGAAGGTTTTGGCTGTTTTTGGTAAGGATTATGCAGACCGAGTGCATCGTGCCTTTACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGGAAGCGCTCTGGAGCTTATTCGGGTGGTTCCTACGACACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTAGACAATCTATACACTTTAGTTCATGAAACTGGGCACAGTTTGCATTCTACTTTCACTCGTGAAACA
CAGCCTTATGTGTATGGAGATTACAGTATTTTCCTAGCAGAAATTGCATCCACAACTAATGAAAACATCATGACAGAAGC
TCTCTTAAATGAGGTTCAAGATGAGAAAGAACGCTTTGCTATTTTAAACCATTACCTTGACGGTTTCCGTGGCACTGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACACGCGATCCATCAAGCTGATCAAAAAGGAGAAGTGTTAACGAGCGAATAC
CTCAACCAATTGTATGCTGATTTGAATGAAAAGTATTATGGGTTGAGTAAAGACGATAATCATTTTATTCAATATGAGTG
GGCACGTATTCCTCACTTCTATTATAATTATTATGTTTATCAGTATGCTACAGGCTTTGCAGCAGCAAGTTATTTAGCCG
ATAAGATTGTTCACGGAACGCAAGACGATATTGATCATTACTTGACCTACCTCAAGTCAGGAAATTCTGACTACCCACTT
GAGGTCATCGCTAAAGCGGGTGTTGATATGGCAAAAGGTGACTATCTTGAAGCAGCCTTTAAAGTCTTCGAAGAACGTCT
AACAGAACTTGAAGCCCTTGTTGCAAAAGGAGTTCATCACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.953

99.833

0.718

Multiple sequence alignment