Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   O987_RS23280 Genome accession   NZ_CP006704
Coordinates   5136412..5136816 (-) Length   134 a.a.
NCBI ID   WP_003051508.1    Uniprot ID   A0A5N7WMG8
Organism   Comamonas testosteroni TK102     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5131412..5141816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O987_RS23265 (O987_24190) - 5133244..5135487 (-) 2244 WP_043375087.1 methyl-accepting chemotaxis protein -
  O987_RS23270 (O987_24195) - 5135507..5136034 (-) 528 WP_003051512.1 chemotaxis protein CheW -
  O987_RS23275 (O987_24200) - 5136050..5136412 (-) 363 WP_003051510.1 response regulator -
  O987_RS23280 (O987_24205) pilG 5136412..5136816 (-) 405 WP_003051508.1 response regulator Regulator
  O987_RS28495 (O987_24210) - 5136868..5137020 (-) 153 WP_034399566.1 rubredoxin -
  O987_RS23285 (O987_24215) thiD 5137212..5138102 (+) 891 WP_043375089.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  O987_RS23290 (O987_24220) hemL 5138086..5139390 (+) 1305 WP_043375092.1 glutamate-1-semialdehyde 2,1-aminomutase -
  O987_RS23295 (O987_24225) - 5139553..5140188 (-) 636 WP_043376902.1 DNA-3-methyladenine glycosylase I -
  O987_RS23300 (O987_24230) - 5140327..5141811 (-) 1485 WP_043375095.1 amino acid permease -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14721.99 Da        Isoelectric Point: 6.2600

>NTDB_id=113600 O987_RS23280 WP_003051508.1 5136412..5136816(-) (pilG) [Comamonas testosteroni TK102]
MTASAAPLRVLVVDDSNTIRRSAEIFLKQGGYEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
NTPIVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFALQAADVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=113600 O987_RS23280 WP_003051508.1 5136412..5136816(-) (pilG) [Comamonas testosteroni TK102]
GTGACAGCATCTGCTGCGCCTTTGCGCGTTCTGGTCGTGGATGACAGCAATACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTTACGAGGTTCTTCTGGCCGATGACGGCTTCGATGCCTTGTCCAAGGTCAACGACTACCAGCCGCAGC
TCATCTTCTGCGACATTCTGATGCCCAAGCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCGCGTTTTGCC
AATACGCCCATCGTGATGCTGTCATCCAAGGACGGTGTCTTCGACAAGGCCCGTGGACGCATGGTGGGCTGTCAGGACTA
TCTGACCAAACCCTTCACCAAAGATCAATTGCTGCAAGCCGTACAACAGTTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5N7WMG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.265

87.313

0.5

Multiple sequence alignment