Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQL89_RS12420 Genome accession   NZ_LS483313
Coordinates   2571566..2572936 (-) Length   456 a.a.
NCBI ID   WP_002481315.1    Uniprot ID   -
Organism   Staphylococcus simulans strain NCTC11046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2566566..2577936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL89_RS12405 (NCTC11046_02543) cysE 2567805..2568434 (-) 630 WP_174165803.1 serine O-acetyltransferase -
  DQL89_RS12410 (NCTC11046_02545) gltX 2568733..2570187 (-) 1455 WP_061054912.1 glutamate--tRNA ligase -
  DQL89_RS12415 (NCTC11046_02546) - 2570474..2571538 (-) 1065 WP_103364207.1 PIN/TRAM domain-containing protein -
  DQL89_RS12420 (NCTC11046_02547) radA 2571566..2572936 (-) 1371 WP_002481315.1 DNA repair protein RadA Machinery gene
  DQL89_RS12425 (NCTC11046_02548) - 2573224..2575689 (-) 2466 WP_061054915.1 ATP-dependent Clp protease ATP-binding subunit -
  DQL89_RS12430 (NCTC11046_02549) - 2575701..2576705 (-) 1005 WP_002481313.1 protein arginine kinase -
  DQL89_RS12435 (NCTC11046_02550) - 2576709..2577113 (-) 405 Protein_2436 UvrB/UvrC motif-containing protein -
  DQL89_RS12440 (NCTC11046_02551) - 2577233..2577694 (-) 462 WP_023016300.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50252.78 Da        Isoelectric Point: 7.4601

>NTDB_id=1135993 DQL89_RS12420 WP_002481315.1 2571566..2572936(-) (radA) [Staphylococcus simulans strain NCTC11046]
MAKKKVTFECMACGYQSPKWMGKCPNCGAWNQMEEVMTQKEAPSGRGMRTREQTAKVTKLNDVQHESTPRIHTSSREFDR
VLGGGIVQGSLVLIGGDPGIGKSTLLLQICSALSQNKKVLYITGEESLNQTKLRADRLEEDSSQLNVFAETDLEVIKEAV
KQTQPDLVVVDSIQTVYHPEISSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFLEERSTNVAGSTIVPTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLNLLMAVLEKKESYLLQQQDAYVKVAGGVRLTEPAVDLAIIAAVASSFKDQPINGMDCFVGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWDFPDNIQVIGVTSVHEALNFALMKS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1135993 DQL89_RS12420 WP_002481315.1 2571566..2572936(-) (radA) [Staphylococcus simulans strain NCTC11046]
TTGGCAAAAAAGAAAGTGACATTTGAATGTATGGCATGTGGTTATCAATCACCGAAATGGATGGGGAAATGTCCGAATTG
TGGTGCTTGGAACCAAATGGAAGAAGTTATGACGCAAAAAGAAGCCCCAAGTGGCAGAGGGATGCGTACAAGAGAACAAA
CAGCTAAAGTAACAAAGTTAAATGATGTCCAACATGAATCTACACCGCGTATCCATACAAGTTCGAGAGAATTTGATCGT
GTCTTAGGTGGCGGTATTGTCCAAGGTTCGCTCGTGTTAATCGGTGGGGACCCTGGTATTGGTAAATCGACATTATTACT
TCAAATTTGTTCTGCGTTATCTCAAAATAAAAAAGTACTTTATATTACAGGTGAGGAATCACTGAATCAAACGAAATTGC
GAGCAGATCGTTTAGAAGAAGATTCAAGTCAATTAAACGTGTTTGCGGAAACAGATTTAGAAGTTATTAAAGAAGCTGTT
AAACAAACACAACCAGACTTAGTGGTAGTAGACTCGATTCAAACAGTGTATCATCCGGAAATCAGTTCAGCGCCTGGTTC
TGTCTCACAAGTACGAGAAAGTACGCAAATTCTGATGGGGATTGCGAAACAAATGAATATCGCAACCTTTATCGTCGGTC
ATGTGACGAAAGAAGGACAAATTGCAGGTCCACGTTTATTAGAACATATGGTAGATACGGTACTATATTTCGAAGGGGAC
GAACACCATGCATATAGAATTCTGCGTGCAGTGAAGAACCGTTTCGGTTCAACGAATGAAATGGGAATCTTCGAAATGAA
ACATAGCGGTTTGAAAGGAGTTAAGAACCCTTCAGAGATGTTCTTAGAAGAACGTTCAACGAATGTAGCTGGCTCTACAA
TTGTTCCGACAATGGAAGGTACACGTCCTTTATTAATTGAAGTGCAAGCATTAGTGACACCGACAACATTTAATAACCCA
AGACGTATGGCGACTGGTATCGATCATAACCGCTTAAATTTATTAATGGCAGTGTTAGAGAAGAAAGAAAGTTACTTGCT
GCAACAACAAGATGCTTATGTCAAAGTTGCAGGCGGCGTGCGTTTAACAGAACCAGCTGTTGATTTAGCAATTATCGCAG
CGGTTGCTTCTAGTTTTAAAGACCAACCTATCAACGGCATGGATTGTTTCGTCGGTGAAGTAGGTCTGACAGGAGAAGTA
CGACGTGTCTCACGTATTGAACAACGTGTTCAAGAAGCAGCGAAATTAGGTTTCAAACGTGTGATTATTCCTAAAACCAA
TATAGGAGGTTGGGACTTCCCAGATAATATTCAAGTTATCGGTGTAACCAGTGTGCATGAAGCACTGAACTTTGCATTGA
TGAAAAGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.864

100

0.66
  radA Streptococcus pneumoniae Rx1

60.802

98.465

0.599
  radA Streptococcus pneumoniae D39

60.802

98.465

0.599
  radA Streptococcus pneumoniae R6

60.802

98.465

0.599
  radA Streptococcus pneumoniae TIGR4

60.802

98.465

0.599
  radA Streptococcus mitis NCTC 12261

60.802

98.465

0.599
  radA Streptococcus mitis SK321

60.802

98.465

0.599

Multiple sequence alignment