Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   DQL89_RS05285 Genome accession   NZ_LS483313
Coordinates   1155153..1156196 (+) Length   347 a.a.
NCBI ID   WP_002481663.1    Uniprot ID   -
Organism   Staphylococcus simulans strain NCTC11046     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1150153..1161196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL89_RS05260 (NCTC11046_01079) - 1151156..1151875 (+) 720 WP_023015863.1 type 1 glutamine amidotransferase -
  DQL89_RS05265 (NCTC11046_01080) - 1151958..1152944 (-) 987 WP_002481667.1 FUSC family protein -
  DQL89_RS05270 (NCTC11046_01081) map 1153164..1153928 (+) 765 WP_060803962.1 type I methionyl aminopeptidase -
  DQL89_RS05275 (NCTC11046_01082) - 1154044..1154439 (+) 396 WP_002481665.1 hypothetical protein -
  DQL89_RS05280 (NCTC11046_01083) liaF 1154455..1155156 (+) 702 WP_002481664.1 cell wall-active antibiotics response protein LiaF -
  DQL89_RS05285 (NCTC11046_01084) vraS 1155153..1156196 (+) 1044 WP_002481663.1 sensor histidine kinase Regulator
  DQL89_RS05290 (NCTC11046_01085) vraR 1156186..1156815 (+) 630 WP_002481662.1 response regulator transcription factor Regulator
  DQL89_RS05295 (NCTC11046_01086) - 1156886..1157464 (-) 579 WP_002481661.1 beta-class carbonic anhydrase -
  DQL89_RS05300 (NCTC11046_01087) - 1157672..1158748 (-) 1077 WP_002481660.1 YihY/virulence factor BrkB family protein -
  DQL89_RS05305 (NCTC11046_01088) - 1158879..1159169 (-) 291 WP_002481659.1 hypothetical protein -
  DQL89_RS05310 (NCTC11046_01089) - 1159177..1159641 (-) 465 WP_023015860.1 low molecular weight protein-tyrosine-phosphatase -
  DQL89_RS05315 (NCTC11046_01090) - 1159865..1160071 (+) 207 WP_002481657.1 DUF1128 family protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39897.15 Da        Isoelectric Point: 4.8944

>NTDB_id=1135971 DQL89_RS05285 WP_002481663.1 1155153..1156196(+) (vraS) [Staphylococcus simulans strain NCTC11046]
MNHYIRAIGSMLILNYSILAIFFFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNIIVILMSIIVGSVLAYKVNEQNDWIKT
QIEHSIEGEVVGINDQNIELYQETLDIYHTLVPLNQELHRLRIKTQDLTNETYNLNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESPLEPPLDQQIPTLEKMVQDSQLEMRALLLHLRPLGLKDRSLGEGIKDLVVDLQKKVPMKVVYDI
EDFEVPKGIEDHLFRITQEGISNTLRHAEGTKLTIDLFNKDDYLLLRIQDDGKGFDVDEKMEKSYGLKNMRERALEIGAT
LHIVSLPGAGTRIEVKAPLNKEENDGD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1135971 DQL89_RS05285 WP_002481663.1 1155153..1156196(+) (vraS) [Staphylococcus simulans strain NCTC11046]
ATGAACCACTATATCAGAGCCATCGGTTCGATGCTGATATTGAACTATAGTATTTTAGCGATTTTCTTTTTTATAGACAA
AGTATTCGTCAACATCATCTACTTTCAAGGAATGTTTTACACGCAGATTTTCGGCATTCCTGTTTTCTTATTTTTAAATA
TTATAGTGATTTTGATGAGTATTATTGTTGGTTCTGTGTTAGCGTATAAAGTGAACGAACAAAATGATTGGATTAAAACA
CAAATTGAACATTCCATTGAAGGGGAAGTTGTCGGTATTAATGATCAAAATATCGAACTCTACCAAGAAACTTTGGATAT
CTATCATACACTTGTGCCATTAAACCAAGAATTACATCGACTACGTATTAAAACACAAGATTTGACCAACGAAACATATA
ATTTAAATGACGTTAAAGTGAAGAAAATTATAGAAGATGAACGCCAGCGTTTAGCTAGGGAATTGCATGATTCAGTTAGT
CAGCAATTATTTGCGGCAAGTATGATGTTATCGGCGATTAAGGAATCACCACTTGAACCGCCACTTGATCAGCAAATTCC
AACACTAGAAAAGATGGTCCAAGATTCGCAACTAGAAATGCGTGCATTGTTATTACATTTAAGACCGCTTGGCTTAAAAG
ATCGCTCACTTGGGGAAGGAATTAAAGATCTTGTTGTGGACTTACAAAAGAAAGTGCCTATGAAAGTAGTTTATGATATT
GAAGACTTTGAGGTACCAAAAGGCATAGAAGATCATTTATTCCGTATCACCCAAGAAGGGATTTCCAATACACTGCGACA
TGCAGAAGGCACAAAATTAACGATAGATTTATTTAATAAAGATGATTATCTGTTATTGCGTATTCAAGATGATGGTAAAG
GCTTTGATGTAGATGAAAAAATGGAGAAAAGCTATGGATTGAAGAATATGCGAGAGCGAGCATTAGAAATCGGGGCAACA
CTGCATATTGTTTCTTTGCCTGGGGCAGGGACAAGAATTGAAGTGAAGGCTCCATTGAATAAGGAGGAAAATGATGGCGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

86.167

100

0.862


Multiple sequence alignment