Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DQL89_RS04935 Genome accession   NZ_LS483313
Coordinates   1085243..1085959 (-) Length   238 a.a.
NCBI ID   WP_002481723.1    Uniprot ID   -
Organism   Staphylococcus simulans strain NCTC11046     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080243..1090959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL89_RS04915 (NCTC11046_01009) - 1081388..1082029 (+) 642 WP_002481727.1 redox-sensing transcriptional repressor Rex -
  DQL89_RS04920 (NCTC11046_01010) - 1082080..1082304 (-) 225 WP_002481726.1 sulfurtransferase TusA family protein -
  DQL89_RS04925 (NCTC11046_01011) - 1082360..1083448 (-) 1089 WP_103364421.1 YeeE/YedE family protein -
  DQL89_RS04930 (NCTC11046_01012) - 1083684..1085168 (+) 1485 WP_103364422.1 GH32 C-terminal domain-containing protein -
  DQL89_RS04935 (NCTC11046_01013) agrA 1085243..1085959 (-) 717 WP_002481723.1 quorum-sensing response regulator AgrA Regulator
  DQL89_RS13800 (NCTC11046_01014) agrC 1085962..1087263 (-) 1302 WP_070463420.1 quorum-sensing sensor histidine kinase AgrC -
  DQL89_RS04945 (NCTC11046_01015) agrD 1087303..1087440 (-) 138 WP_023015908.1 cyclic lactone autoinducer peptide AgrD -
  DQL89_RS04950 (NCTC11046_01016) - 1087440..1088018 (-) 579 WP_002481720.1 accessory gene regulator AgrB -
  DQL89_RS13440 - 1088330..1088494 (+) 165 WP_158257062.1 delta-lysin family phenol-soluble modulin -
  DQL89_RS04960 (NCTC11046_01018) - 1088799..1089599 (-) 801 WP_070626460.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27762.55 Da        Isoelectric Point: 4.6392

>NTDB_id=1135970 DQL89_RS04935 WP_002481723.1 1085243..1085959(-) (agrA) [Staphylococcus simulans strain NCTC11046]
MKIIICEDDVQQREHIESIIENYIMIEEKPLEVALSTGDPYEVLEFAKATNEICCYFLDIQLDSDINGIKLGSELRNYDS
VGSIIFITSHSELTYLTFVYKVAAMDFIFKDDPSEMKSRIIDCIETALTRLQLLSKESSLETIELKRGSNSVYVNYDDVM
FFESSAKSHRLIAHLDNRQIEFYGNLKDLSQLDDRFFRCHNSYVINRNNIEEVISKEREVYFKNGEHCYISVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1135970 DQL89_RS04935 WP_002481723.1 1085243..1085959(-) (agrA) [Staphylococcus simulans strain NCTC11046]
GTGAAGATTATTATATGCGAAGATGATGTACAACAGCGTGAACACATTGAATCCATCATTGAAAATTATATTATGATTGA
AGAAAAACCTTTAGAAGTGGCGCTCTCAACGGGTGATCCTTATGAGGTATTAGAATTCGCTAAAGCTACAAATGAGATTT
GTTGTTACTTCTTAGATATTCAGTTAGATTCTGATATTAACGGTATTAAGCTTGGCAGCGAACTTAGAAACTATGATTCT
GTCGGCAGTATTATCTTTATTACTAGCCACAGTGAACTCACTTATCTTACTTTCGTTTATAAAGTAGCAGCCATGGACTT
TATTTTTAAAGATGACCCTTCAGAAATGAAATCTCGAATTATTGATTGTATCGAAACTGCATTGACGAGACTACAGTTGC
TTTCAAAAGAATCTAGTCTCGAAACAATTGAGTTAAAACGTGGTAGTAACTCAGTCTATGTTAATTACGATGATGTCATG
TTCTTTGAATCCTCGGCAAAATCACATCGCTTAATTGCGCATTTAGACAATCGTCAAATCGAATTTTATGGCAACTTAAA
AGATTTAAGCCAATTAGATGACCGCTTCTTCCGTTGTCACAATAGTTACGTCATTAATCGCAATAACATCGAAGAAGTAA
TATCTAAAGAACGTGAGGTCTACTTTAAAAATGGTGAACACTGTTATATCTCAGTAAGAAATTTAAAGAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

79.412

100

0.794

Multiple sequence alignment