Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D934_RS08290 Genome accession   NZ_CP006696
Coordinates   1783466..1783912 (-) Length   148 a.a.
NCBI ID   WP_020852950.1    Uniprot ID   A0A060H1M4
Organism   Xylella fastidiosa subsp. sandyi Ann-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1778466..1788912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D934_RS08275 (D934_08855) - 1778769..1779179 (-) 411 WP_020852104.1 MerC domain-containing protein -
  D934_RS08280 (D934_08860) - 1779339..1781384 (+) 2046 WP_024749298.1 TonB-dependent receptor -
  D934_RS14480 (D934_08865) - 1781926..1782078 (+) 153 WP_155266653.1 hypothetical protein -
  D934_RS08285 (D934_08870) - 1783121..1783447 (-) 327 WP_024749194.1 pyocin activator PrtN family protein -
  D934_RS08290 (D934_08875) ssb 1783466..1783912 (-) 447 WP_020852950.1 single-stranded DNA-binding protein Machinery gene
  D934_RS08295 (D934_08880) - 1783896..1784102 (-) 207 WP_230577765.1 hypothetical protein -
  D934_RS15610 - 1784261..1784425 (-) 165 Protein_1637 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  D934_RS08305 (D934_08890) - 1784518..1785051 (-) 534 WP_020853058.1 pilin -
  D934_RS14790 - 1785029..1785190 (-) 162 WP_196242788.1 hypothetical protein -
  D934_RS08310 (D934_08895) - 1785183..1785449 (-) 267 WP_020853057.1 hypothetical protein -
  D934_RS08315 (D934_08900) - 1785446..1785724 (-) 279 WP_020853056.1 hypothetical protein -
  D934_RS08320 (D934_08905) - 1785721..1785942 (-) 222 WP_021358638.1 hypothetical protein -
  D934_RS08325 (D934_08910) - 1785939..1786388 (-) 450 WP_020852697.1 hypothetical protein -
  D934_RS08330 (D934_08915) - 1786385..1786855 (-) 471 WP_020852698.1 DUF1566 domain-containing protein -
  D934_RS08335 (D934_08920) - 1786852..1787313 (-) 462 WP_230577766.1 hypothetical protein -
  D934_RS14490 - 1787421..1787966 (-) 546 WP_024749191.1 hypothetical protein -
  D934_RS08345 (D934_08935) - 1788029..1788427 (-) 399 WP_020852700.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16605.49 Da        Isoelectric Point: 7.3543

>NTDB_id=113584 D934_RS08290 WP_020852950.1 1783466..1783912(-) (ssb) [Xylella fastidiosa subsp. sandyi Ann-1]
MARGINKVILVGNLGNEPDIKYTQSGMTITNISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIANQMHMLGGRGEGSSGITPQQRPAKVRNNDKAYAYAGDDFHDDDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=113584 D934_RS08290 WP_020852950.1 1783466..1783912(-) (ssb) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGGCACGCGGAATTAACAAGGTAATCCTAGTCGGCAACCTGGGGAACGAGCCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAACATTAGCCTAGCAACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCCGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTAACCAAATGCACAT
GCTTGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCAGCGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060H1M4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

42.045

100

0.5
  ssb Neisseria meningitidis MC58

39.306

100

0.459
  ssb Neisseria gonorrhoeae MS11

39.306

100

0.459
  ssb Glaesserella parasuis strain SC1401

42.029

93.243

0.392

Multiple sequence alignment