Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQL09_RS10535 Genome accession   NZ_LS483307
Coordinates   55244..55339 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC5163     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 50244..60339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL09_RS00325 (NCTC5163_00065) - 50708..52516 (+) 1809 WP_111676987.1 ATP-binding protein -
  DQL09_RS00330 (NCTC5163_00066) purB 52825..54117 (+) 1293 WP_111676988.1 adenylosuccinate lyase -
  DQL09_RS00335 (NCTC5163_00067) comR 54249..55160 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  DQL09_RS10535 (NCTC5163_00068) comS 55244..55339 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  DQL09_RS00340 (NCTC5163_00069) ruvB 55386..56384 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  DQL09_RS00345 (NCTC5163_00070) - 56522..56959 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQL09_RS00350 (NCTC5163_00071) - 56982..57383 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  DQL09_RS00355 (NCTC5163_00072) - 57380..59155 (+) 1776 WP_111676989.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=1135804 DQL09_RS10535 WP_198462994.1 55244..55339(+) (comS) [Streptococcus pyogenes strain NCTC5163]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=1135804 DQL09_RS10535 WP_198462994.1 55244..55339(+) (comS) [Streptococcus pyogenes strain NCTC5163]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment