Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL09_RS09545 Genome accession   NZ_LS483307
Coordinates   1823507..1824220 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC5163     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1818507..1829220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL09_RS09535 (NCTC5163_01904) treC 1819577..1821205 (-) 1629 WP_111677530.1 alpha,alpha-phosphotrehalase -
  DQL09_RS09540 (NCTC5163_01905) treP 1821272..1823296 (-) 2025 WP_111677531.1 PTS system trehalose-specific EIIBC component -
  DQL09_RS09545 (NCTC5163_01906) treR 1823507..1824220 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  DQL09_RS09555 - 1824541..1824830 (-) 290 Protein_1800 winged helix-turn-helix transcriptional regulator -
  DQL09_RS09560 (NCTC5163_01907) - 1825017..1825874 (+) 858 WP_111677534.1 VOC family protein -
  DQL09_RS09565 (NCTC5163_01908) yaaA 1825916..1826647 (+) 732 WP_030126186.1 peroxide stress protein YaaA -
  DQL09_RS09570 (NCTC5163_01909) nrdG 1826821..1827435 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQL09_RS09575 (NCTC5163_01910) - 1827435..1827944 (-) 510 WP_111677535.1 GNAT family N-acetyltransferase -
  DQL09_RS09580 (NCTC5163_01911) - 1827953..1828888 (-) 936 WP_111677536.1 Gfo/Idh/MocA family protein -
  DQL09_RS10210 (NCTC5163_01912) - 1828917..1829063 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=1135799 DQL09_RS09545 WP_002992823.1 1823507..1824220(+) (treR) [Streptococcus pyogenes strain NCTC5163]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1135799 DQL09_RS09545 WP_002992823.1 1823507..1824220(+) (treR) [Streptococcus pyogenes strain NCTC5163]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment